ggKbase home page

NECEvent2014_6_7_scaffold_2426_1

Organism: NECEvent2014_6_7_Peptoclostridium_difficile_29_7_partial

partial RP 33 / 55 BSCG 30 / 51 ASCG 7 / 38 MC: 3
Location: comp(3..1094)

Top 3 Functional Annotations

Value Algorithm Source
Putative conjugative transfer protein Tn1549-like, CTn4-Orf4 n=1 Tax=Clostridium difficile E28 RepID=U4BB04_CLODI similarity UNIREF
DB: UNIREF100
  • Identity: 98.6
  • Coverage: 364.0
  • Bit_score: 722
  • Evalue 1.80e-205
TraG/TraD family protein {ECO:0000313|EMBL:EEU96892.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii similarity UNIPROT
DB: UniProtKB
  • Identity: 97.5
  • Coverage: 364.0
  • Bit_score: 715
  • Evalue 4.00e-203
Type IV secretory pathway, VirD4 components similarity KEGG
DB: KEGG
  • Identity: 95.5
  • Coverage: 358.0
  • Bit_score: 690
  • Evalue 2.70e-196

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Faecalibacterium prausnitzii → Faecalibacterium → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 1092
ATGAACGCTATTAACTGGAAAAAGCGGATACTTCCCAACATTCCCTATCTGCTCTTTGTGTATCTCTTTGATAAAGTTGGGCAGGCGGTACGCCTTGCGCCGGGGGCTGACCTGCCCGGTAAGGTGCTGTCGCTTGGGGAGGGTTTTTCTATGGCTTTTGCAACTCCGCTTCCGAGCCTTGCCCCTATGGATTTACTGATAGGGATTTTCGGCGCGGTACTTATCCGGCTGATTGTCTATGTAAAAGGCAAGAACGCGAAGAAATATCGCAAAGGTGTGGAATACGGCTCTGCCCGTTGGGGAAATGCCGAAGATATACGCCCCTACACCGACCCGGTATTTCAAAATAACGTGCTGCTGACACAGACGGAACGGCTTACCATGAACAGCCGCCCGAAGCAGCCGAAGTATGCAAGGAATAAAAATATCCTTGTTATCGGGGGAAGCGGTAGCGGAAAAACGCGATTTTTTGTGAAGCCCAACCTTATGCAAATGCACAGCTCATACGTTGTAACCGACCCGAAAGGAACGGTTTTAGTCGAGTGCGGGAAGCTCTTACAGCGGGGCGGCTACCGGATAAAGGTGCTGAACACCATTAACTTCAAAAAAAGCATGAAATACAATCCCTTTGCCTATCTCCGCAGCGAGAAAGACATTTTGAAACTGGTAAACACCTTGATTGCCAACACCAAAGGGGACGGGGAAAAAGCTGGGGAGGATTTTTGGGTAAAATCGGAACGGCTCTTTTACTGCGCCCTTATCGGCTACATTTGGTACGAAGCCCCGGAGGAAGAAAAGAACTTCACGACGCTGCTTGAAATGATAAATGCCAGTGAAGCCCGCGAGGACGACCCGGAATTTCAGTCCCCCGTTGACCTCATGTTTGAACGGTTGGAGGAAAAAGACCCGGAACACTTTGCTGTCCGGCAGTATAAGAAATTCCTGCTGTCTGCGGGAAAGACAAGAAGCTCTATCCTCATTTCCTGCGGTGCGCGGCTTGCCCCCTTTGACATTAAAGAGCTGCGCGACCTTATGGAAACCGACGAAATGGAGCTTGACACCATAGGCGACCGCAAGACCGCCCTGTTTGTT
PROTEIN sequence
Length: 364
MNAINWKKRILPNIPYLLFVYLFDKVGQAVRLAPGADLPGKVLSLGEGFSMAFATPLPSLAPMDLLIGIFGAVLIRLIVYVKGKNAKKYRKGVEYGSARWGNAEDIRPYTDPVFQNNVLLTQTERLTMNSRPKQPKYARNKNILVIGGSGSGKTRFFVKPNLMQMHSSYVVTDPKGTVLVECGKLLQRGGYRIKVLNTINFKKSMKYNPFAYLRSEKDILKLVNTLIANTKGDGEKAGEDFWVKSERLFYCALIGYIWYEAPEEEKNFTTLLEMINASEAREDDPEFQSPVDLMFERLEEKDPEHFAVRQYKKFLLSAGKTRSSILISCGARLAPFDIKELRDLMETDEMELDTIGDRKTALFV