ggKbase home page

NECEvent2014_6_7_scaffold_3763_1

Organism: NECEvent2014_6_7_Peptoclostridium_difficile_29_7_partial

partial RP 33 / 55 BSCG 30 / 51 ASCG 7 / 38 MC: 3
Location: comp(1..1710)

Top 3 Functional Annotations

Value Algorithm Source
rpoC; DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6) similarity KEGG
DB: KEGG
  • Identity: 99.8
  • Coverage: 570.0
  • Bit_score: 1141
  • Evalue 0.0
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase similarity UNIPROT
DB: UniProtKB
  • Identity: 99.8
  • Coverage: 570.0
  • Bit_score: 1141
  • Evalue 0.0
DNA-directed RNA polymerase subunit beta' n=3 Tax=Clostridium difficile RepID=T3TF38_CLODI similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 570.0
  • Bit_score: 1142
  • Evalue 0.0

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Peptoclostridium difficile → Peptoclostridium → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 1710
TTGTTTGAATTAAACAATTTCGAGTCGATAAAAATAGCATTGGCTTCTCCAGAAAAAATAAGACAATGGTCTAGGGGAGAAGTTAAAAAGCCAGAAACTATAAATTACCGTACTTTAAAACCAGAAAAAGATGGTCTTTTCTGTGAAAGAATATTTGGACCACAAAAAGACTGGGAGTGCCACTGTGGTAAATATAGAAGAGTTAGATATAAAGGTGTAGTTTGTGATAGATGTGGAGTAGAAGTAACTAAATCAAAAGTAAGAAGAGAGAGAATGGGACATATAGAGCTAGCTGCTCCTATGTCTCACATCTGGTACTTCAAAGGTATACCAAGTAGAATGGGACTTTTACTTGATATGTCACCAAGATCGTTAGAAAAAATATTATACTTTGCCTCATATGTGGTAGTTGATCCAGGAGAGACTGGATTAAATGAAAAACAATTGCTTACAGAAAAAGAATACAGAACTGCTCTTGAAAAGTATGGATATACTTTTACTGTAGGAATGGGTGCTGAAGCTGTAAAGACATTACTACAAAATATAGATTTAGAGCAACAAAGTAAAGACCTAAGAGCGGAGTTAAAAGATAGTACAGGGCAAAAGAAAGTTAGAACAATAAGAAGATTAGAAGTTGTAGAGGCATTTAAAAAGTCTGGAAATAAACCAGAATGGATGATTTTAGATGCAATACCAGTAATACCACCAGATTTAAGACCAATGGTACAACTTGATGGTGGAAGATTTGCGACTTCAGACCTAAATGATTTATATAGAAGAGTTATAAATAGAAACAATAGACTTAAAAGATTATTAGAGCTTGGAGCTCCAGATATAATTGTAAGAAATGAAAAAAGAATGCTTCAAGAAGCTGTTGATGCATTGATAGATAATGGTAGAAGAGGTAGACCTGTAACAGGACCTGGAAATAGACCACTTAAATCTTTATCAGATATGTTAAAAGGTAAGCAAGGTCGTTTCCGTCAAAACTTACTTGGTAAGCGTGTTGACTACTCAGGACGTTCTGTTATAGTTGTTGGACCAGAACTTAAATTTTATCAATGTGGACTTCCAAAGAAGATGGCATTAGAATTATTCAAGCCATTTGTTATGGATAAATTAGTTAAAGAAGGTTATGCACATAATATAAAAAGTGCGAAATCTATAGTAGAAAAAGTTAAGCCAGAAGTTTGGGATGTTTTAGAAGATGTTATAAAAAGTCATCCAGTTCTTCTTAACCGTGCACCGACTCTACATAGATTAGGTATACAAGCATTTGAACCAATCTTAGTTGAAGGTAAGGCTATAAAACTACATCCTCTTGTATGTACAGCTTATAATGCAGACTTTGATGGTGACCAAATGGCAGTCCATGTACCTTTATCAGTAGAAGCACAAGCAGAAGCAAGATTCTTAATGCTTTCTGTAAATAATATACTTGCTCCTAAAGATGGTTCACCTATAACTACTCCATCTCAGGATATGGTTTTAGGTTGCTATTATCTAACAATAGAAGCCCAAGATGGAGCTAAAGGAACAGGTATGGTATTTAAAGACTTTAATGAACTATTACTTGCTTATTACAATAAATCAGTTCATCTACATGCATTAGTGAAACTGAAGGTAACACTTGAAGATGGAAGAAGTTCATTGGTTGAAAGTACTGTTGGTAGATTTATATTTAATGAAAATATACCTCAAGACTTAGGT
PROTEIN sequence
Length: 570
LFELNNFESIKIALASPEKIRQWSRGEVKKPETINYRTLKPEKDGLFCERIFGPQKDWECHCGKYRRVRYKGVVCDRCGVEVTKSKVRRERMGHIELAAPMSHIWYFKGIPSRMGLLLDMSPRSLEKILYFASYVVVDPGETGLNEKQLLTEKEYRTALEKYGYTFTVGMGAEAVKTLLQNIDLEQQSKDLRAELKDSTGQKKVRTIRRLEVVEAFKKSGNKPEWMILDAIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLELGAPDIIVRNEKRMLQEAVDALIDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKFYQCGLPKKMALELFKPFVMDKLVKEGYAHNIKSAKSIVEKVKPEVWDVLEDVIKSHPVLLNRAPTLHRLGIQAFEPILVEGKAIKLHPLVCTAYNADFDGDQMAVHVPLSVEAQAEARFLMLSVNNILAPKDGSPITTPSQDMVLGCYYLTIEAQDGAKGTGMVFKDFNELLLAYYNKSVHLHALVKLKVTLEDGRSSLVESTVGRFIFNENIPQDLG