Advanced Search

gwa2_scaffold_63_26 Annotations

Value	Algorithm	Source	Identity	Coverage	Bit score	Evalue	Cross references
KH type 1 domain protein n=1 Tax=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) RepID=B8GGD0_METPE	similarity	UNIREF DB: UNIREF90	45.0	0.0	142	1.00e+00	mpl:Mpal_2793
RNA-processing protein; K06961 ribosomal RNA assembly protein Tax=AR5		UNIPROT DB: UniProtKB	100.0	167.0	322	3.40e-85	ggdbv1_18248736
RNA-processing protein	similarity	KEGG DB: KEGG	45.9	172.0	142	9.80e-32	mpl:Mpal_2793
seg (db=Seg db_id=seg from=37 to=49)	iprscan	interpro DB: Seg	0.0	0.0	0	0.0	mpl:Mpal_2793
no description (db=HMMSmart db_id=SM00322 from=1 to=62 evalue=0.033 interpro_id=IPR004087 interpro_description=K Homology GO=Molecular Function: RNA binding (GO:0003723))	iprscan	interpro DB: HMMSmart	0.0	0.0	0	0.0	mpl:Mpal_2793
arCOG04150: arCOG04150 universal archaeal (db=HMMTigr db_id=TIGR03665 from=4 to=167 evalue=1.3e-51 interpro_id=IPR019964 interpro_description=KH domain protein, archaea)	iprscan	interpro DB: HMMTigr	0.0	0.0	0	1.00e+00	mpl:Mpal_2793
no description (db=Gene3D db_id=G3DSA:3.30.1370.10 from=5 to=74 evalue=1.2e-12)	iprscan	interpro DB: Gene3D	0.0	0.0	0	1.00e+00	mpl:Mpal_2793
Eukaryotic type KH-domain (KH-domain type I) (db=superfamily db_id=SSF54791 from=76 to=156 evalue=2.7e-13)	iprscan	interpro DB: superfamily	0.0	0.0	0	2.00e+00	mpl:Mpal_2793
(db=HMMPfam db_id=PF00013 from=4 to=53 evalue=7.6e-08 interpro_id=IPR018111 interpro_description=K Homology, type 1, subgroup GO=Molecular Function: RNA binding (GO:0003723))	iprscan	interpro DB: HMMPfam	0.0	0.0	0	7.00e+00	mpl:Mpal_2793
KH_TYPE_1 (db=ProfileScan db_id=PS50084 from=1 to=57 evalue=9.791 interpro_id=IPR004088 interpro_description=K Homology, type 1 GO=Molecular Function: RNA binding (GO:0003723))	iprscan	interpro DB: ProfileScan	0.0	0.0	0	9.00e+00	mpl:Mpal_2793

SCG Annotations
ASCG KH type 1 domain protein

ggKBase is a service designed to assist in analyzing and integrating *omic data (e.g. metagenomics, proteomics, etc). The source code for ggKBase will be made available as an open source project.
You are encouraged to contact the development staff with issues related to usage of ggKBase. The ggKBase development staff as well as the members of the Banfield lab at the University of California, Berkeley, are not available to support outside research/computation requests.
We aim to make ggKBase the best resource possible and to make it accurate and available at all times; however, we cannot guarantee the correctness of any results, validity or integrity of the data, or the availability of the service: We cannot be held responsible for decisions made, losses suffered, or damages that resulted from using data from ggKBase.
We respect our user’s privacy and will not share any user registration details with anyone other than the ggKBase developers.
ggKBase is a social web site – it has mechanisms to share results and comments with other users of the system. As a registered user of ggKBase, you agree to respect the rights of other users and conduct yourself in a professional manner with courtesy and collegiality towards your fellow users. We reserve the right to delete users found not upholding these standards.
We reserve the right to reject inappropriate data submissions. As a User, you agree not to submit data that is not your own and you agree that any data you do submit is being submitted specifically for the purposes of analyzing using ggKBase.
ggKBase and its underlying servers and systems are properly administrated and backed up. However, ggKBase is not responsible for data loss or work loss as a result of system or hardware failures or criminal activity.
We reserve the right to perform additional data analysis to improve ggKBase, and we will not release user-contributed data without consent of the user.
Users of ggKBase are expected to properly cite any published work.
We reserve the right at any time to modify the Terms of Service for ggKBase. Modifications to these Terms will be effective immediately and we will make a reasonable effort to contact users via email of any changes. If you continue using ggKBase after an amendment to the Terms of Service, we assume you have read and accepted the changes.