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gwa2_scaffold_13280_20

Organism: GWA2_OD1_47_8

partial RP 33 / 55 MC: 1 BSCG 34 / 51 MC: 2 ASCG 7 / 38 MC: 1
Location: comp(20944..22215)

Top 3 Functional Annotations

Value Algorithm Source
RpoD subfamily RNA polymerase sigma-70 factor; K03086 RNA polymerase primary sigma factor Tax=RIFCSPHIGHO2_01_FULL_OD1_47_10b_curated UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 423.0
  • Bit_score: 809
  • Evalue 1.80e-231
RNA polymerase sigma factor RpoD KEGG
DB: KEGG
  • Identity: 50.0
  • Coverage: 402.0
  • Bit_score: 368
  • Evalue 3.60e-99
RNA polymerase sigma factor similarity UNIREF
DB: UNIREF90
  • Identity: 0.0
  • Coverage: 0.0
  • Bit_score: 367
  • Evalue 4.00e+00

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Taxonomy

R_OD1_47_10b → Parcubacteria → Bacteria

Sequences

DNA sequence
Length: 1272
ATGCAGCTAACACACTATATTGCAATGTCAGTACGCACAAAAAAGACGAGAACTATAAAGCGTATAAAAGCCAAGAAGTCAATTGCGTCGAACGTATCACGGAACAAAAAATCACGGACGAAGCAACGACAATCGAGGTCTATTGCAAGCGCACGGATTACCACGCAGGATCACGAACATGTTCAGGCGCTTGTGAAGCGCGGGCGTAACCGTGGTTTTGTGACGTTTGACGAGATTATTACCGCATTTCCGTCCATCGAACTCAAGATTGCATTATTGGAAGAATTATATGACGCGTTGTCCGGCGCCAATGTTGAAGTAATAGAGCGGCCATCAAGTTTCTCGGTCGTGCTACCAGAGTCAACAAAAAAGGAGGCGCCCGTTGCGAAAGACGGCCGAAAGCGACGAAAAACAAGCACAACGGTGAGCATGTCGGAACTGCCGCTGGATTCGGTACAAATGTATTTACATGAGATTGGTCGGGTGCAGCTATTAAGCCGCAAGGAGGAGATCGATTTAGCCAAGCGGATAGAACGCAACGATCAACAAGCAAAGCAGCAGCTTATTGGTGCAAACTTACGCCTTGTGGTGTCGATTGCCAAGCGGTACGCGTACCGAACGCCAAATTTAACGTTGCTAGACTTGATCCAAGAGGGGAACCTCGGCTTGTTTCGCGCCGCAGAGAAATTTGACTACAAAAAAGGGTACAAATTTTCGACCTATGCGACGTGGTGGATTCGCCAGGCAATCACCCGCGCAATAGCTGATCAGTCCCGCACCATCCGCATTCCGGTGCACATGGTTGAAACCATTTCGAAATATATGCAGATCAAGCGGCGTTTGGCGCAGATTCTTGGACGACCCGCATTAGTCGAGGAGGTTGCAGCAGAGATGGAGATGGACATCGATAAAGTCGAGCAGGTGAAACGAATTTCGCAAAAGACCATTTCACTTGAAACGCCAGTCGGCGAGGATGACGATGAAGAGTCAACGCTCGCACAATTTATTGAGGACGAAAAATCACTGTCGCCGGATCGGCTTACGGCGCGGAAGTTTCTAAAGGCACATATTATCGAAATTTTGCACACACTACGACCGCGCGAGAAAAAGATTCTTGAAATGCGGTTCGGGCTCGAAGACGGCGAGACCCATACACTCGAAGAAGTGGGAAAGAAATTTGGCGTTACCCGCGAGCGCATTCGTCAAATCGAAGCGAAAGCCCTTCAAAAAATTCGCGAATCAGAACACGCGGAGAAGTTGAGAGGGTATTAA
PROTEIN sequence
Length: 424
MQLTHYIAMSVRTKKTRTIKRIKAKKSIASNVSRNKKSRTKQRQSRSIASARITTQDHEHVQALVKRGRNRGFVTFDEIITAFPSIELKIALLEELYDALSGANVEVIERPSSFSVVLPESTKKEAPVAKDGRKRRKTSTTVSMSELPLDSVQMYLHEIGRVQLLSRKEEIDLAKRIERNDQQAKQQLIGANLRLVVSIAKRYAYRTPNLTLLDLIQEGNLGLFRAAEKFDYKKGYKFSTYATWWIRQAITRAIADQSRTIRIPVHMVETISKYMQIKRRLAQILGRPALVEEVAAEMEMDIDKVEQVKRISQKTISLETPVGEDDDEESTLAQFIEDEKSLSPDRLTARKFLKAHIIEILHTLRPREKKILEMRFGLEDGETHTLEEVGKKFGVTRERIRQIEAKALQKIRESEHAEKLRGY*