ggKbase | annotations

Value	Algorithm	Source	Identity	Coverage	Bit score	Evalue	Cross references
transcription termination factor NusA	similarity	KEGG DB: KEGG	38.2	421.0	290	9.60e-76	tjr:TherJR_1374
coiled-coil (db=Coil db_id=coil from=391 to=412 evalue=NA)	iprscan	interpro DB: Coil	null	null	null	null	tjr:TherJR_1374
seg (db=Seg db_id=seg from=382 to=396)	iprscan	interpro DB: Seg	null	null	null	null	tjr:TherJR_1374
seg (db=Seg db_id=seg from=59 to=72)	iprscan	interpro DB: Seg	null	null	null	null	tjr:TherJR_1374
seg (db=Seg db_id=seg from=402 to=425)	iprscan	interpro DB: Seg	null	null	null	null	tjr:TherJR_1374
coiled-coil (db=Coil db_id=coil from=78 to=102 evalue=NA)	iprscan	interpro DB: Coil	null	null	null	null	tjr:TherJR_1374
NusA: transcription termination factor NusA (db=HMMTigr db_id=TIGR01953 from=4 to=381 evalue=7.5e-120 interpro_id=IPR010213 interpro_description=Transcription termination factor NusA GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: transcription regulator activity (GO:0030528))	iprscan	interpro DB: HMMTigr	null	null	null	7.50e-120	tjr:TherJR_1374
TRANSCRIPTION TERMINATION FACTOR NUSA (db=HMMPanther db_id=PTHR22648 from=1 to=422 evalue=1.1e-91)	iprscan	interpro DB: HMMPanther	null	null	null	1.10e-91	tjr:TherJR_1374
NusA_N (db=HMMPfam db_id=PF08529 from=4 to=162 evalue=2.2e-32 interpro_id=IPR013735 interpro_description=Transcription factor NusA, N-terminal GO=Molecular Function: transcription factor activity (GO:0003700), Molecular Function: protein binding (GO:0005515), Biological Process: regulation of transcription termination (GO:0031554))	iprscan	interpro DB: HMMPfam	null	null	null	2.20e-32	tjr:TherJR_1374
Transcription factor NusA, N-terminal domain (db=superfamily db_id=SSF69705 from=1 to=164 evalue=4.5e-31 interpro_id=IPR013735 interpro_description=Transcription factor NusA, N-terminal GO=Molecular Function: transcription factor activity (GO:0003700), Molecular Function: protein binding (GO:0005515), Biological Process: regulation of transcription termination (GO:0031554))	iprscan	interpro DB: superfamily	null	null	null	4.50e-31	tjr:TherJR_1374
no description (db=Gene3D db_id=G3DSA:3.30.1480.10 from=1 to=172 evalue=2.7e-30 interpro_id=IPR013735 interpro_description=Transcription factor NusA, N-terminal GO=Molecular Function: transcription factor activity (GO:0003700), Molecular Function: protein binding (GO:0005515), Biological Process: regulation of transcription termination (GO:0031554))	iprscan	interpro DB: Gene3D	null	null	null	2.70e-30	tjr:TherJR_1374
Prokaryotic type KH domain (KH-domain type II) (db=superfamily db_id=SSF54814 from=238 to=315 evalue=9.6e-27 interpro_id=IPR009019 interpro_description=K Homology, prokaryotic type GO=Molecular Function: RNA binding (GO:0003723))	iprscan	interpro DB: superfamily	null	null	null	9.60e-27	tjr:TherJR_1374
no description (db=Gene3D db_id=G3DSA:3.30.300.20 from=252 to=330 evalue=1.7e-25 interpro_id=IPR015946 interpro_description=K homology-like, alpha/beta)	iprscan	interpro DB: Gene3D	null	null	null	1.70e-25	tjr:TherJR_1374
Prokaryotic type KH domain (KH-domain type II) (db=superfamily db_id=SSF54814 from=317 to=382 evalue=4.8e-16 interpro_id=IPR009019 interpro_description=K Homology, prokaryotic type GO=Molecular Function: RNA binding (GO:0003723))	iprscan	interpro DB: superfamily	null	null	null	4.80e-16	tjr:TherJR_1374
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=169 to=237 evalue=2.2e-15 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like)	iprscan	interpro DB: superfamily	null	null	null	2.20e-15	tjr:TherJR_1374
no description (db=Gene3D db_id=G3DSA:2.40.50.140 from=189 to=251 evalue=3.6e-13 interpro_id=IPR012340 interpro_description=Nucleic acid-binding, OB-fold)	iprscan	interpro DB: Gene3D	null	null	null	3.60e-13	tjr:TherJR_1374
no description (db=Gene3D db_id=G3DSA:3.30.300.20 from=330 to=382 evalue=6.1e-12 interpro_id=IPR015946 interpro_description=K homology-like, alpha/beta)	iprscan	interpro DB: Gene3D	null	null	null	6.10e-12	tjr:TherJR_1374
no description (db=HMMSmart db_id=SM00316 from=171 to=238 evalue=6.0e-10)	iprscan	interpro DB: HMMSmart	null	null	null	6.00e-10	tjr:TherJR_1374
S1 (db=HMMPfam db_id=PF00575 from=169 to=236 evalue=3.4e-09 interpro_id=IPR003029 interpro_description=Ribosomal protein S1, RNA-binding domain GO=Molecular Function: RNA binding (GO:0003723))	iprscan	interpro DB: HMMPfam	null	null	null	3.40e-09	tjr:TherJR_1374
no description (db=HMMSmart db_id=SM00322 from=268 to=341 evalue=0.19 interpro_id=IPR004087 interpro_description=K Homology GO=Molecular Function: RNA binding (GO:0003723))	iprscan	interpro DB: HMMSmart	null	null	null	1.90e-01	tjr:TherJR_1374
no description (db=HMMSmart db_id=SM00322 from=342 to=410 evalue=0.48 interpro_id=IPR004087 interpro_description=K Homology GO=Molecular Function: RNA binding (GO:0003723))	iprscan	interpro DB: HMMSmart	null	null	null	4.80e-01	tjr:TherJR_1374
KH_TYPE_1 (db=ProfileScan db_id=PS50084 from=340 to=405 evalue=9.246 interpro_id=IPR004088 interpro_description=K Homology, type 1 GO=Molecular Function: RNA binding (GO:0003723))	iprscan	interpro DB: ProfileScan	null	null	null	9.25e+00	tjr:TherJR_1374
S1 (db=ProfileScan db_id=PS50126 from=173 to=238 evalue=12.934 interpro_id=IPR003029 interpro_description=Ribosomal protein S1, RNA-binding domain GO=Molecular Function: RNA binding (GO:0003723))	iprscan	interpro DB: ProfileScan	null	null	null	1.29e+01	tjr:TherJR_1374
transcription termination factor NusA; K02600 N utilization substance protein A alias=ACD18_C00029G00010,ACD18_215.21151.23G0010,ACD18_215.21151.23_10 id=13136 tax=ACD18 species=Thermoanaerobacterium thermosaccharolyticum genus=Thermoanaerobacterium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes organism_group=OD1, not OD1-i organism_desc= OD1	similarity	UNIREF DB: UNIREF90	100.0	null	822	7.80e-236	tjr:TherJR_1374
Transcription termination/antitermination protein NusA {ECO:0000256\|HAMAP-Rule:MF_00945}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"		UNIPROT DB: UniProtKB	100.0	425.0	822	2.70e-235	K2EB41_9BACT

transcription termination factor NusA

similarity

KEGG
DB: KEGG

38.2

421.0

290

9.60e-76

tjr:TherJR_1374

coiled-coil (db=Coil db_id=coil from=391 to=412 evalue=NA)

iprscan

interpro
DB: Coil

null

tjr:TherJR_1374

seg (db=Seg db_id=seg from=382 to=396)

iprscan

interpro
DB: Seg

null

tjr:TherJR_1374

seg (db=Seg db_id=seg from=59 to=72)

iprscan

interpro
DB: Seg

null

tjr:TherJR_1374

seg (db=Seg db_id=seg from=402 to=425)

iprscan

interpro
DB: Seg

null

tjr:TherJR_1374

coiled-coil (db=Coil db_id=coil from=78 to=102 evalue=NA)

iprscan

interpro
DB: Coil

null

tjr:TherJR_1374

NusA: transcription termination factor NusA (db=HMMTigr db_id=TIGR01953 from=4 to=381 evalue=7.5e-120 interpro_id=IPR010213 interpro_description=Transcription termination factor NusA GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: transcription regulator activity (GO:0030528))

iprscan

interpro
DB: HMMTigr

null

7.50e-120

tjr:TherJR_1374

TRANSCRIPTION TERMINATION FACTOR NUSA (db=HMMPanther db_id=PTHR22648 from=1 to=422 evalue=1.1e-91)

iprscan

interpro
DB: HMMPanther

null

1.10e-91

tjr:TherJR_1374

NusA_N (db=HMMPfam db_id=PF08529 from=4 to=162 evalue=2.2e-32 interpro_id=IPR013735 interpro_description=Transcription factor NusA, N-terminal GO=Molecular Function: transcription factor activity (GO:0003700), Molecular Function: protein binding (GO:0005515), Biological Process: regulation of transcription termination (GO:0031554))

iprscan

interpro
DB: HMMPfam

null

2.20e-32

tjr:TherJR_1374

Transcription factor NusA, N-terminal domain (db=superfamily db_id=SSF69705 from=1 to=164 evalue=4.5e-31 interpro_id=IPR013735 interpro_description=Transcription factor NusA, N-terminal GO=Molecular Function: transcription factor activity (GO:0003700), Molecular Function: protein binding (GO:0005515), Biological Process: regulation of transcription termination (GO:0031554))

iprscan

interpro
DB: superfamily

null

4.50e-31

tjr:TherJR_1374

no description (db=Gene3D db_id=G3DSA:3.30.1480.10 from=1 to=172 evalue=2.7e-30 interpro_id=IPR013735 interpro_description=Transcription factor NusA, N-terminal GO=Molecular Function: transcription factor activity (GO:0003700), Molecular Function: protein binding (GO:0005515), Biological Process: regulation of transcription termination (GO:0031554))

iprscan

interpro
DB: Gene3D

null

2.70e-30

tjr:TherJR_1374

Prokaryotic type KH domain (KH-domain type II) (db=superfamily db_id=SSF54814 from=238 to=315 evalue=9.6e-27 interpro_id=IPR009019 interpro_description=K Homology, prokaryotic type GO=Molecular Function: RNA binding (GO:0003723))

iprscan

interpro
DB: superfamily

null

9.60e-27

tjr:TherJR_1374

no description (db=Gene3D db_id=G3DSA:3.30.300.20 from=252 to=330 evalue=1.7e-25 interpro_id=IPR015946 interpro_description=K homology-like, alpha/beta)

iprscan

interpro
DB: Gene3D

null

1.70e-25

tjr:TherJR_1374

Prokaryotic type KH domain (KH-domain type II) (db=superfamily db_id=SSF54814 from=317 to=382 evalue=4.8e-16 interpro_id=IPR009019 interpro_description=K Homology, prokaryotic type GO=Molecular Function: RNA binding (GO:0003723))

iprscan

interpro
DB: superfamily

null

4.80e-16

tjr:TherJR_1374

Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=169 to=237 evalue=2.2e-15 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like)

iprscan

interpro
DB: superfamily

null

2.20e-15

tjr:TherJR_1374

no description (db=Gene3D db_id=G3DSA:2.40.50.140 from=189 to=251 evalue=3.6e-13 interpro_id=IPR012340 interpro_description=Nucleic acid-binding, OB-fold)

iprscan

interpro
DB: Gene3D

null

3.60e-13

tjr:TherJR_1374

no description (db=Gene3D db_id=G3DSA:3.30.300.20 from=330 to=382 evalue=6.1e-12 interpro_id=IPR015946 interpro_description=K homology-like, alpha/beta)

iprscan

interpro
DB: Gene3D

null

6.10e-12

tjr:TherJR_1374

no description (db=HMMSmart db_id=SM00316 from=171 to=238 evalue=6.0e-10)

iprscan

interpro
DB: HMMSmart

null

6.00e-10

tjr:TherJR_1374

S1 (db=HMMPfam db_id=PF00575 from=169 to=236 evalue=3.4e-09 interpro_id=IPR003029 interpro_description=Ribosomal protein S1, RNA-binding domain GO=Molecular Function: RNA binding (GO:0003723))

iprscan

interpro
DB: HMMPfam

null

3.40e-09

tjr:TherJR_1374

no description (db=HMMSmart db_id=SM00322 from=268 to=341 evalue=0.19 interpro_id=IPR004087 interpro_description=K Homology GO=Molecular Function: RNA binding (GO:0003723))

iprscan

interpro
DB: HMMSmart

null

1.90e-01

tjr:TherJR_1374

no description (db=HMMSmart db_id=SM00322 from=342 to=410 evalue=0.48 interpro_id=IPR004087 interpro_description=K Homology GO=Molecular Function: RNA binding (GO:0003723))

iprscan

interpro
DB: HMMSmart

null

4.80e-01

tjr:TherJR_1374

KH_TYPE_1 (db=ProfileScan db_id=PS50084 from=340 to=405 evalue=9.246 interpro_id=IPR004088 interpro_description=K Homology, type 1 GO=Molecular Function: RNA binding (GO:0003723))

iprscan

interpro
DB: ProfileScan

null

9.25e+00

tjr:TherJR_1374

S1 (db=ProfileScan db_id=PS50126 from=173 to=238 evalue=12.934 interpro_id=IPR003029 interpro_description=Ribosomal protein S1, RNA-binding domain GO=Molecular Function: RNA binding (GO:0003723))

iprscan

interpro
DB: ProfileScan

null

1.29e+01

tjr:TherJR_1374

transcription termination factor NusA; K02600 N utilization substance protein A alias=ACD18_C00029G00010,ACD18_215.21151.23G0010,ACD18_215.21151.23_10 id=13136 tax=ACD18 species=Thermoanaerobacterium thermosaccharolyticum genus=Thermoanaerobacterium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes organism_group=OD1, not OD1-i organism_desc= OD1

similarity

UNIREF
DB: UNIREF90

100.0

null

822

7.80e-236

tjr:TherJR_1374

Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"

UNIPROT
DB: UniProtKB

100.0

425.0

822

2.70e-235

K2EB41_9BACT

ACD18_29_10 Annotations

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