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gwf2_scaffold_1960_13 Annotations

Value Algorithm Source Identity Coverage Bit score Evalue Cross references
transcription-repair coupling factor; K03723 transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated UNIPROT
DB: UniProtKB
100.0 999.99 2111 0.0 ggdbv1_89392311
Transcription-repair coupling factor n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CBU7_THET1 rbh similarity UNIREF
DB: UNIREF90
45.0 0.0 677 4.00e+00 ttr:Tter_1355
transcription-repair coupling factor similarity KEGG
DB: KEGG
45.9 786.0 678 3.20e-192 ttr:Tter_1355
mfd: transcription-repair coupling factor (db=HMMTigr db_id=TIGR00580 from=152 to=1003 evalue=0.0 interpro_id=IPR004576 interpro_description=Transcription-repair coupling factor GO=Molecular Function: damaged DNA binding (GO:0003684), Molecular Function: helicase activity (GO:0004386), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA repair (GO:0006281)) iprscan interpro
DB: HMMTigr
0.0 0.0 0 0.0 ttr:Tter_1355
seg (db=Seg db_id=seg from=242 to=258) iprscan interpro
DB: Seg
0.0 0.0 0 0.0 ttr:Tter_1355
no description (db=HMMSmart db_id=SM00487 from=524 to=714 evalue=1.0e-30 interpro_id=IPR014001 interpro_description=DEAD-like helicase) iprscan interpro
DB: HMMSmart
0.0 0.0 0 1.00e+00 ttr:Tter_1355
no description (db=HMMSmart db_id=SM00490 from=750 to=834 evalue=1.2e-19 interpro_id=IPR001650 interpro_description=Helicase, C-terminal GO=Molecular Function: nucleic acid binding (GO:0003676), Molecular Function: helicase activity (GO:0004386), Molecular Function: ATP binding (GO:0005524)) iprscan interpro
DB: HMMSmart
0.0 0.0 0 1.00e+00 ttr:Tter_1355
DEAD BOX ATP-DEPENDENT RNA HELICASE (db=HMMPanther db_id=PTHR10967 from=513 to=850 evalue=1.1e-05) iprscan interpro
DB: HMMPanther
0.0 0.0 0 1.00e+00 ttr:Tter_1355
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=133 to=222 evalue=1.1e-07) iprscan interpro
DB: Gene3D
0.0 0.0 0 1.00e+00 ttr:Tter_1355
TRCF domain-like (db=superfamily db_id=SSF143517 from=914 to=1075 evalue=1.8e-26) iprscan interpro
DB: superfamily
0.0 0.0 0 1.00e+00 ttr:Tter_1355
(db=HMMPfam db_id=PF00270 from=534 to=688 evalue=1.6e-17 interpro_id=IPR011545 interpro_description=DNA/RNA helicase, DEAD/DEAH box type, N-terminal GO=Molecular Function: nucleic acid binding (GO:0003676), Molecular Function: ATP binding (GO:0005524), Molecular Function: ATP-dependent helicase activity (GO:0008026)) iprscan interpro
DB: HMMPfam
0.0 0.0 0 1.00e+00 ttr:Tter_1355
(db=HMMPfam db_id=PF00271 from=762 to=833 evalue=1.4e-12 interpro_id=IPR001650 interpro_description=Helicase, C-terminal GO=Molecular Function: nucleic acid binding (GO:0003676), Molecular Function: helicase activity (GO:0004386), Molecular Function: ATP binding (GO:0005524)) iprscan interpro
DB: HMMPfam
0.0 0.0 0 1.00e+00 ttr:Tter_1355
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=446 to=708 evalue=2.1e-64) iprscan interpro
DB: superfamily
0.0 0.0 0 2.00e+00 ttr:Tter_1355
(db=HMMPfam db_id=PF02559 from=404 to=500 evalue=2.9e-28 interpro_id=IPR003711 interpro_description=CarD-like/TRCF domain) iprscan interpro
DB: HMMPfam
0.0 0.0 0 2.00e+00 ttr:Tter_1355
(db=HMMPfam db_id=PF03461 from=929 to=1006 evalue=4.2e-22 interpro_id=IPR005118 interpro_description=Transcription-repair-coupling factor domain GO=Molecular Function: damaged DNA binding (GO:0003684), Molecular Function: helicase activity (GO:0004386), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA repair (GO:0006281)) iprscan interpro
DB: HMMPfam
0.0 0.0 0 4.00e+00 ttr:Tter_1355
CarD-like (db=superfamily db_id=SSF141259 from=393 to=472 evalue=5.3e-24 interpro_id=IPR003711 interpro_description=CarD-like/TRCF domain) iprscan interpro
DB: superfamily
0.0 0.0 0 5.00e+00 ttr:Tter_1355
HELICASE_CTER (db=ProfileScan db_id=PS51194 from=716 to=877 evalue=15.065 interpro_id=IPR001650 interpro_description=Helicase, C-terminal GO=Molecular Function: nucleic acid binding (GO:0003676), Molecular Function: helicase activity (GO:0004386), Molecular Function: ATP binding (GO:0005524)) iprscan interpro
DB: ProfileScan
0.0 0.0 0 1.50e+01 ttr:Tter_1355
HELICASE_ATP_BIND_1 (db=ProfileScan db_id=PS51192 from=542 to=703 evalue=21.795 interpro_id=IPR014001 interpro_description=DEAD-like helicase) iprscan interpro
DB: ProfileScan
0.0 0.0 0 2.10e+01 ttr:Tter_1355