ggKbase home page

gwf2_scaffold_174_92 Annotations

Value Algorithm Source Identity Coverage Bit score Evalue Cross references
rluB2; ribosomal large subunit pseudouridine synthase B (EC:5.4.99.22) similarity KEGG
DB: KEGG
44.4 232.0 210 4.10e-52 cad:Curi_c14280
Pseudouridine synthase n=1 Tax=Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a) RepID=K0AXB2_CLOA9 similarity UNIREF
DB: UNIREF90
44.0 0.0 210 5.00e+00 cad:Curi_c14280
ribosomal large subunit pseudouridine synthase B Tax=PER_GWF2_39_17 UNIPROT
DB: UniProtKB
100.0 234.0 478 4.00e-132 ggdbv1_5096788
PSI_RSU (db=PatternScan db_id=PS01149 from=100 to=114 evalue=0.0 interpro_id=IPR018496 interpro_description=Pseudouridine synthase, RsuA and RluB/E/F, conserved site GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: intramolecular transferase activity (GO:0016866)) iprscan interpro
DB: PatternScan
0.0 0.0 0 0.0 cad:Curi_c14280
seg (db=Seg db_id=seg from=109 to=112) iprscan interpro
DB: Seg
0.0 0.0 0 0.0 cad:Curi_c14280
Pseudouridine synthase (db=superfamily db_id=SSF55120 from=59 to=234 evalue=1.8e-39 interpro_id=IPR020103 interpro_description=Pseudouridine synthase, catalytic domain GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: pseudouridine synthase activity (GO:0009982)) iprscan interpro
DB: superfamily
0.0 0.0 0 1.00e+00 cad:Curi_c14280
no description (db=HMMSmart db_id=SM00363 from=1 to=63 evalue=4.1e-11 interpro_id=IPR002942 interpro_description=RNA-binding S4 GO=Molecular Function: RNA binding (GO:0003723)) iprscan interpro
DB: HMMSmart
0.0 0.0 0 4.00e+00 cad:Curi_c14280
RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE B (db=HMMPanther db_id=PTHR21600:SF2 from=5 to=228 evalue=5.0e-65) iprscan interpro
DB: HMMPanther
0.0 0.0 0 5.00e+00 cad:Curi_c14280
(db=HMMPfam db_id=PF00849 from=63 to=200 evalue=6.5e-19 interpro_id=IPR006145 interpro_description=Pseudouridine synthase, RsuA and RluB/C/D/E/F GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: pseudouridine synthase activity (GO:0009982)) iprscan interpro
DB: HMMPfam
0.0 0.0 0 6.00e+00 cad:Curi_c14280
TIGR00093: pseudouridine synthase (db=HMMTigr db_id=TIGR00093 from=67 to=232 evalue=7.7e-47 interpro_id=IPR000748 interpro_description=Pseudouridine synthase, RsuA/RluB/E/F GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: intramolecular transferase activity (GO:0016866)) iprscan interpro
DB: HMMTigr
0.0 0.0 0 7.00e+00 cad:Curi_c14280
(db=HMMPfam db_id=PF01479 from=1 to=46 evalue=7.6e-11 interpro_id=IPR002942 interpro_description=RNA-binding S4 GO=Molecular Function: RNA binding (GO:0003723)) iprscan interpro
DB: HMMPfam
0.0 0.0 0 7.00e+00 cad:Curi_c14280
Alpha-L RNA-binding motif (db=superfamily db_id=SSF55174 from=1 to=60 evalue=8.5e-13) iprscan interpro
DB: superfamily
0.0 0.0 0 8.00e+00 cad:Curi_c14280
S4 (db=ProfileScan db_id=PS50889 from=1 to=66 evalue=14.161 interpro_id=IPR002942 interpro_description=RNA-binding S4 GO=Molecular Function: RNA binding (GO:0003723)) iprscan interpro
DB: ProfileScan
0.0 0.0 0 1.40e+01 cad:Curi_c14280
similarity in-house
DB: RefSeq
null null null null cad:Curi_c14280