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gwf2_scaffold_174_96 Annotations

Value Algorithm Source Identity Coverage Bit score Evalue Cross references
RNA polymerase sigma factor n=1 Tax=Nitrolancetus hollandicus Lb RepID=I4ECK9_9CHLR similarity UNIREF
DB: UNIREF90
33.0 0.0 114 5.00e+00 sbh:SBI_06006
AdsA-like sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=PER_GWF2_39_17 UNIPROT
DB: UniProtKB
100.0 202.0 412 4.00e-112 ggdbv1_5096792
AdsA-like sigma factor similarity KEGG
DB: KEGG
30.6 186.0 109 8.50e-22 sbh:SBI_06006
no description (db=Gene3D db_id=G3DSA:1.10.1740.10 from=23 to=106 evalue=1.5e-16) iprscan interpro
DB: Gene3D
0.0 0.0 0 1.00e+00 sbh:SBI_06006
(db=HMMPfam db_id=PF04542 from=39 to=105 evalue=1.1e-15 interpro_id=IPR007627 interpro_description=RNA polymerase sigma-70 region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMPfam
0.0 0.0 0 1.00e+00 sbh:SBI_06006
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=13 to=125 evalue=1.4e-24 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma fact iprscan interpro
DB: superfamily
0.0 0.0 0 1.00e+00 sbh:SBI_06006
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=124 to=194 evalue=1.4e-12 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Funct iprscan interpro
DB: superfamily
0.0 0.0 0 1.00e+00 sbh:SBI_06006
(db=HMMPfam db_id=PF08281 from=138 to=188 evalue=2.4e-08 interpro_id=IPR013249 interpro_description=RNA polymerase sigma factor 70, region 4 type 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMPfam
0.0 0.0 0 2.00e+00 sbh:SBI_06006
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=34 to=192 evalue=8.1e-39 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:00169 iprscan interpro
DB: HMMTigr
0.0 0.0 0 8.00e+00 sbh:SBI_06006