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gwf2_scaffold_332_12 Annotations

Value Algorithm Source Identity Coverage Bit score Evalue Cross references
RNA polymerase sigma factor n=1 Tax=alpha proteobacterium HIMB59 RepID=J9Z1S3_9PROT similarity UNIREF
DB: UNIREF90
44.0 0.0 71 5.00e+00 saal:L336_0818
rpoD; RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor Tax=PER_GWF2_39_17 UNIPROT
DB: UniProtKB
100.0 359.0 697 1.10e-197 ggdbv1_5097046
hypothetical protein similarity KEGG
DB: KEGG
32.2 369.0 193 7.90e-47 saal:L336_0818
seg (db=Seg db_id=seg from=5 to=19) iprscan interpro
DB: Seg
0.0 0.0 0 0.0 saal:L336_0818
(db=HMMPfam db_id=PF04545 from=30 to=82 evalue=1.2e-15 interpro_id=IPR007630 interpro_description=RNA polymerase sigma-70 region 4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMPfam
0.0 0.0 0 1.00e+00 saal:L336_0818
SIGMA70FCT (db=FPrintScan db_id=PR00046 from=33 to=45 evalue=1.9e-13 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: FPrintScan
0.0 0.0 0 1.00e+00 saal:L336_0818
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=15 to=101 evalue=2.4e-16 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding) iprscan interpro
DB: Gene3D
0.0 0.0 0 2.00e+00 saal:L336_0818
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=15 to=101 evalue=4.5e-15 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Functi iprscan interpro
DB: superfamily
0.0 0.0 0 4.00e+00 saal:L336_0818