| Value | Algorithm | Source | Identity | Coverage | Bit score | Evalue | Cross references |
|---|---|---|---|---|---|---|---|
| RNA polymerase sigma factor n=1 Tax=Clostridium ultunense Esp RepID=M1Z3C1_9CLOT rbh | similarity |
UNIREF
DB: UNIREF90 |
57.0 | 0.0 | 408 | 2.00e+00 | hor:Hore_12400 |
| RpoD subfamily RNA polymerase sigma-70 subunit, RNA polymerase primary sigma factor {ECO:0000313|EMBL:KKR07963.1}; TaxID=1619067 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacte |
UNIPROT
DB: UniProtKB |
100.0 | 389.0 | 755 | 3.70e-215 | A0A0G0MXR5_9BACT | |
| RpoD subfamily RNA polymerase sigma-70 subunit | similarity |
KEGG
DB: KEGG |
56.0 | 377.0 | 399 | 1.00e-108 | hor:Hore_12400 |
| seg (db=Seg db_id=seg from=96 to=103) | iprscan |
interpro
DB: Seg |
0.0 | 0.0 | 0 | 0.0 | hor:Hore_12400 |
| SIGMA70_1 (db=PatternScan db_id=PS00715 from=183 to=196 evalue=0.0 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: PatternScan |
0.0 | 0.0 | 0 | 0.0 | hor:Hore_12400 |
| sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=154 to=382 evalue=1.2e-28 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016 | iprscan |
interpro
DB: HMMTigr |
0.0 | 0.0 | 0 | 1.00e+00 | hor:Hore_12400 |
| (db=HMMPfam db_id=PF04545 from=328 to=380 evalue=1.4e-18 interpro_id=IPR007630 interpro_description=RNA polymerase sigma-70 region 4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
0.0 | 0.0 | 0 | 1.00e+00 | hor:Hore_12400 |
| Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=120 to=229 evalue=1.2e-54 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma fac | iprscan |
interpro
DB: superfamily |
0.0 | 0.0 | 0 | 1.00e+00 | hor:Hore_12400 |
| no description (db=Gene3D db_id=G3DSA:1.10.601.10 from=122 to=228 evalue=2.7e-53) | iprscan |
interpro
DB: Gene3D |
0.0 | 0.0 | 0 | 2.00e+00 | hor:Hore_12400 |
| RpoD_Cterm: RNA polymerase sigma factor R (db=HMMTigr db_id=TIGR02393 from=155 to=388 evalue=3.0e-156 interpro_id=IPR012760 interpro_description=RNA polymerase sigma factor RpoD, C-terminal GO=Molecular Function: DNA binding (GO:0003677), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMTigr |
0.0 | 0.0 | 0 | 3.00e+00 | hor:Hore_12400 |
| (db=HMMPfam db_id=PF03979 from=17 to=86 evalue=3.0e-08 interpro_id=IPR007127 interpro_description=RNA polymerase sigma factor 70, region 1.1 GO=Molecular Function: DNA binding (GO:0003677), Biological Process: regulation of transcription, DNA-dependent (GO:0006355)) | iprscan |
interpro
DB: HMMPfam |
0.0 | 0.0 | 0 | 3.00e+00 | hor:Hore_12400 |
| (db=HMMPfam db_id=PF00140 from=120 to=156 evalue=5.6e-15 interpro_id=IPR009042 interpro_description=RNA polymerase sigma-70 region 1.2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
0.0 | 0.0 | 0 | 5.00e+00 | hor:Hore_12400 |
| (db=HMMPfam db_id=PF04539 from=238 to=314 evalue=6.8e-26 interpro_id=IPR007624 interpro_description=RNA polymerase sigma-70 region 3 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
0.0 | 0.0 | 0 | 6.00e+00 | hor:Hore_12400 |
| SIGMA70FCT (db=FPrintScan db_id=PR00046 from=183 to=196 evalue=7.5e-31 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
0.0 | 0.0 | 0 | 7.00e+00 | hor:Hore_12400 |
| no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=232 to=283 evalue=7.2e-17 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding) | iprscan |
interpro
DB: Gene3D |
0.0 | 0.0 | 0 | 7.00e+00 | hor:Hore_12400 |
| (db=HMMPfam db_id=PF04542 from=159 to=229 evalue=8.0e-25 interpro_id=IPR007627 interpro_description=RNA polymerase sigma-70 region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
0.0 | 0.0 | 0 | 8.00e+00 | hor:Hore_12400 |
| Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=289 to=384 evalue=9.4e-25 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Funct | iprscan |
interpro
DB: superfamily |
0.0 | 0.0 | 0 | 9.00e+00 | hor:Hore_12400 |
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