ggKbase | annotations

Value	Algorithm	Source	Identity	Coverage	Bit score	Evalue	Cross references
Polyribonucleotide nucleotidyltransferase, polyribonucleotide nucleotidyltransferase {ECO:0000313\|EMBL:KKP44582.1}; EC=2.7.7.8 {ECO:0000313\|EMBL:KKP44582.1};; TaxID=1619089 species="Bacteria; candidat		UNIPROT DB: UniProtKB	100.0	565.0	1100	0.0	A0A0G0CMI7_9BACT
polynucleotide phosphorylase/polyadenylase (EC:2.7.7.8)	similarity	KEGG DB: KEGG	43.1	576.0	455	3.00e-125	cag:Cagg_2522
Polyribonucleotide nucleotidyltransferase n=1 Tax=Calditerrivibrio nitroreducens (strain DSM 19672 / NBRC 101217 / Yu37-1) RepID=E4TJD6_CALNY rbh	similarity	UNIREF DB: UNIREF90	44.0	0.0	452	1.00e+00	cag:Cagg_2522
seg (db=Seg db_id=seg from=132 to=147)	iprscan	interpro DB: Seg	0.0	0.0	0	0.0	cag:Cagg_2522
no description (db=HMMSmart db_id=SM00322 from=414 to=479 evalue=1.1e-07 interpro_id=IPR004087 interpro_description=K Homology GO=Molecular Function: RNA binding (GO:0003723))	iprscan	interpro DB: HMMSmart	0.0	0.0	0	1.00e+00	cag:Cagg_2522
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=481 to=565 evalue=1.8e-22 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like)	iprscan	interpro DB: superfamily	0.0	0.0	0	1.00e+00	cag:Cagg_2522
Eukaryotic type KH-domain (KH-domain type I) (db=superfamily db_id=SSF54791 from=409 to=484 evalue=1.5e-15)	iprscan	interpro DB: superfamily	0.0	0.0	0	1.00e+00	cag:Cagg_2522
(db=HMMPfam db_id=PF00575 from=483 to=552 evalue=1.2e-17 interpro_id=IPR003029 interpro_description=Ribosomal protein S1, RNA-binding domain GO=Molecular Function: RNA binding (GO:0003723))	iprscan	interpro DB: HMMPfam	0.0	0.0	0	1.00e+00	cag:Cagg_2522
(db=HMMPfam db_id=PF00013 from=419 to=472 evalue=1.1e-12 interpro_id=IPR018111 interpro_description=K Homology, type 1, subgroup GO=Molecular Function: RNA binding (GO:0003723))	iprscan	interpro DB: HMMPfam	0.0	0.0	0	1.00e+00	cag:Cagg_2522
Ribonuclease PH domain 2-like (db=superfamily db_id=SSF55666 from=314 to=422 evalue=2.4e-24 interpro_id=IPR015847 interpro_description=Exoribonuclease, phosphorolytic domain 2 GO=Molecular Function: RNA binding (GO:0003723), Biological Process: RNA processing (GO:0006396))	iprscan	interpro DB: superfamily	0.0	0.0	0	2.00e+00	cag:Cagg_2522
(db=HMMPfam db_id=PF01138 from=183 to=317 evalue=3.6e-11 interpro_id=IPR001247 interpro_description=Exoribonuclease, phosphorolytic domain 1)	iprscan	interpro DB: HMMPfam	0.0	0.0	0	3.00e+00	cag:Cagg_2522
(db=HMMPfam db_id=PF03725 from=321 to=387 evalue=4.0e-07 interpro_id=IPR015847 interpro_description=Exoribonuclease, phosphorolytic domain 2 GO=Molecular Function: RNA binding (GO:0003723), Biological Process: RNA processing (GO:0006396))	iprscan	interpro DB: HMMPfam	0.0	0.0	0	4.00e+00	cag:Cagg_2522
no description (db=Gene3D db_id=G3DSA:1.10.10.400 from=104 to=179 evalue=5.1e-05 interpro_id=IPR015848 interpro_description=Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type GO=Molecular Function: 3'-5'-exoribonuclease activity (GO:0000175), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA processing (GO:0006396))	iprscan	interpro DB: Gene3D	0.0	0.0	0	5.00e+00	cag:Cagg_2522
no description (db=HMMSmart db_id=SM00316 from=482 to=552 evalue=6.0e-24 interpro_id=IPR022967 interpro_description=RNA-binding domain, S1)	iprscan	interpro DB: HMMSmart	0.0	0.0	0	6.00e+00	cag:Cagg_2522
Ribosomal protein S5 domain 2-like (db=superfamily db_id=SSF54211 from=174 to=325 evalue=6.0e-37 interpro_id=IPR020568 interpro_description=Ribosomal protein S5 domain 2-type fold)	iprscan	interpro DB: superfamily	0.0	0.0	0	6.00e+00	cag:Cagg_2522
(db=HMMPfam db_id=PF03726 from=135 to=180 evalue=6.8e-06 interpro_id=IPR015848 interpro_description=Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type GO=Molecular Function: 3'-5'-exoribonuclease activity (GO:0000175), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA processing (GO:0006396))	iprscan	interpro DB: HMMPfam	0.0	0.0	0	6.00e+00	cag:Cagg_2522
no description (db=Gene3D db_id=G3DSA:2.40.50.140 from=481 to=554 evalue=6.8e-20 interpro_id=IPR012340 interpro_description=Nucleic acid-binding, OB-fold)	iprscan	interpro DB: Gene3D	0.0	0.0	0	6.00e+00	cag:Cagg_2522
POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE (db=HMMPanther db_id=PTHR11252 from=10 to=554 evalue=7.2e-160 interpro_id=IPR012162 interpro_description=Polyribonucleotide nucleotidyltransferase GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: polyribonucleotide nucleotidyltransferase activity (GO:0004654), Biological Process: mRNA catabolic process (GO:0006402))	iprscan	interpro DB: HMMPanther	0.0	0.0	0	7.00e+00	cag:Cagg_2522
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 (db=superfamily db_id=SSF46915 from=93 to=186 evalue=9.6e-12 interpro_id=IPR015848 interpro_description=Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type GO=Molecular Function: 3'-5'-exoribonuclease activity (GO:0000175), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA processing (GO:0006396))	iprscan	interpro DB: superfamily	0.0	0.0	0	9.00e+00	cag:Cagg_2522
KH_TYPE_1 (db=ProfileScan db_id=PS50084 from=415 to=474 evalue=14.634 interpro_id=IPR004088 interpro_description=K Homology, type 1 GO=Molecular Function: RNA binding (GO:0003723))	iprscan	interpro DB: ProfileScan	0.0	0.0	0	1.40e+01	cag:Cagg_2522
S1 (db=ProfileScan db_id=PS50126 from=484 to=552 evalue=22.271 interpro_id=IPR003029 interpro_description=Ribosomal protein S1, RNA-binding domain GO=Molecular Function: RNA binding (GO:0003723))	iprscan	interpro DB: ProfileScan	0.0	0.0	0	2.20e+01	cag:Cagg_2522

Polyribonucleotide nucleotidyltransferase, polyribonucleotide nucleotidyltransferase {ECO:0000313|EMBL:KKP44582.1}; EC=2.7.7.8 {ECO:0000313|EMBL:KKP44582.1};; TaxID=1619089 species="Bacteria; candidat

UNIPROT
DB: UniProtKB

100.0

565.0

1100

0.0

A0A0G0CMI7_9BACT

polynucleotide phosphorylase/polyadenylase (EC:2.7.7.8)

similarity

KEGG
DB: KEGG

43.1

576.0

455

3.00e-125

cag:Cagg_2522

Polyribonucleotide nucleotidyltransferase n=1 Tax=Calditerrivibrio nitroreducens (strain DSM 19672 / NBRC 101217 / Yu37-1) RepID=E4TJD6_CALNY rbh

similarity

UNIREF
DB: UNIREF90

44.0

0.0

452

1.00e+00

cag:Cagg_2522

seg (db=Seg db_id=seg from=132 to=147)

iprscan

interpro
DB: Seg

0.0

0

0.0

cag:Cagg_2522

no description (db=HMMSmart db_id=SM00322 from=414 to=479 evalue=1.1e-07 interpro_id=IPR004087 interpro_description=K Homology GO=Molecular Function: RNA binding (GO:0003723))

iprscan

interpro
DB: HMMSmart

0.0

0

1.00e+00

cag:Cagg_2522

Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=481 to=565 evalue=1.8e-22 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like)

iprscan

interpro
DB: superfamily

0.0

0

1.00e+00

cag:Cagg_2522

Eukaryotic type KH-domain (KH-domain type I) (db=superfamily db_id=SSF54791 from=409 to=484 evalue=1.5e-15)

iprscan

interpro
DB: superfamily

0.0

0

1.00e+00

cag:Cagg_2522

(db=HMMPfam db_id=PF00575 from=483 to=552 evalue=1.2e-17 interpro_id=IPR003029 interpro_description=Ribosomal protein S1, RNA-binding domain GO=Molecular Function: RNA binding (GO:0003723))

iprscan

interpro
DB: HMMPfam

0.0

0

1.00e+00

cag:Cagg_2522

(db=HMMPfam db_id=PF00013 from=419 to=472 evalue=1.1e-12 interpro_id=IPR018111 interpro_description=K Homology, type 1, subgroup GO=Molecular Function: RNA binding (GO:0003723))

iprscan

interpro
DB: HMMPfam

0.0

0

1.00e+00

cag:Cagg_2522

Ribonuclease PH domain 2-like (db=superfamily db_id=SSF55666 from=314 to=422 evalue=2.4e-24 interpro_id=IPR015847 interpro_description=Exoribonuclease, phosphorolytic domain 2 GO=Molecular Function: RNA binding (GO:0003723), Biological Process: RNA processing (GO:0006396))

iprscan

interpro
DB: superfamily

0.0

0

2.00e+00

cag:Cagg_2522

(db=HMMPfam db_id=PF01138 from=183 to=317 evalue=3.6e-11 interpro_id=IPR001247 interpro_description=Exoribonuclease, phosphorolytic domain 1)

iprscan

interpro
DB: HMMPfam

0.0

0

3.00e+00

cag:Cagg_2522

(db=HMMPfam db_id=PF03725 from=321 to=387 evalue=4.0e-07 interpro_id=IPR015847 interpro_description=Exoribonuclease, phosphorolytic domain 2 GO=Molecular Function: RNA binding (GO:0003723), Biological Process: RNA processing (GO:0006396))

iprscan

interpro
DB: HMMPfam

0.0

0

4.00e+00

cag:Cagg_2522

no description (db=Gene3D db_id=G3DSA:1.10.10.400 from=104 to=179 evalue=5.1e-05 interpro_id=IPR015848 interpro_description=Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type GO=Molecular Function: 3'-5'-exoribonuclease activity (GO:0000175), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA processing (GO:0006396))

iprscan

interpro
DB: Gene3D

0.0

0

5.00e+00

cag:Cagg_2522

no description (db=HMMSmart db_id=SM00316 from=482 to=552 evalue=6.0e-24 interpro_id=IPR022967 interpro_description=RNA-binding domain, S1)

iprscan

interpro
DB: HMMSmart

0.0

0

6.00e+00

cag:Cagg_2522

Ribosomal protein S5 domain 2-like (db=superfamily db_id=SSF54211 from=174 to=325 evalue=6.0e-37 interpro_id=IPR020568 interpro_description=Ribosomal protein S5 domain 2-type fold)

iprscan

interpro
DB: superfamily

0.0

0

6.00e+00

cag:Cagg_2522

(db=HMMPfam db_id=PF03726 from=135 to=180 evalue=6.8e-06 interpro_id=IPR015848 interpro_description=Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type GO=Molecular Function: 3'-5'-exoribonuclease activity (GO:0000175), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA processing (GO:0006396))

iprscan

interpro
DB: HMMPfam

0.0

0

6.00e+00

cag:Cagg_2522

no description (db=Gene3D db_id=G3DSA:2.40.50.140 from=481 to=554 evalue=6.8e-20 interpro_id=IPR012340 interpro_description=Nucleic acid-binding, OB-fold)

iprscan

interpro
DB: Gene3D

0.0

0

6.00e+00

cag:Cagg_2522

POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE (db=HMMPanther db_id=PTHR11252 from=10 to=554 evalue=7.2e-160 interpro_id=IPR012162 interpro_description=Polyribonucleotide nucleotidyltransferase GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: polyribonucleotide nucleotidyltransferase activity (GO:0004654), Biological Process: mRNA catabolic process (GO:0006402))

iprscan

interpro
DB: HMMPanther

0.0

0

7.00e+00

cag:Cagg_2522

Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 (db=superfamily db_id=SSF46915 from=93 to=186 evalue=9.6e-12 interpro_id=IPR015848 interpro_description=Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type GO=Molecular Function: 3'-5'-exoribonuclease activity (GO:0000175), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA processing (GO:0006396))

iprscan

interpro
DB: superfamily

0.0

0

9.00e+00

cag:Cagg_2522

KH_TYPE_1 (db=ProfileScan db_id=PS50084 from=415 to=474 evalue=14.634 interpro_id=IPR004088 interpro_description=K Homology, type 1 GO=Molecular Function: RNA binding (GO:0003723))

iprscan

interpro
DB: ProfileScan

0.0

0

1.40e+01

cag:Cagg_2522

S1 (db=ProfileScan db_id=PS50126 from=484 to=552 evalue=22.271 interpro_id=IPR003029 interpro_description=Ribosomal protein S1, RNA-binding domain GO=Molecular Function: RNA binding (GO:0003723))

iprscan

interpro
DB: ProfileScan

0.0

0

2.20e+01

cag:Cagg_2522

gwf1_scaffold_290_1 Annotations

Processing

Terms of Service

Search Help