ggKbase home page

gwf1_scaffold_8031_4 Annotations

Value Algorithm Source Identity Coverage Bit score Evalue Cross references
RNA binding S1 domain protein n=2 Tax=Roseiflexus RepID=A7NKT3_ROSCS similarity UNIREF
DB: UNIREF90
37.0 0.0 288 3.00e+00 rca:Rcas_2015
RNA-binding S1 domain-containing protein, small subunit ribosomal protein S1 {ECO:0000313|EMBL:KKP43973.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 ba UNIPROT
DB: UniProtKB
100.0 410.0 786 2.10e-224 A0A0F9ZIF6_9BACT
RNA-binding S1 domain-containing protein similarity KEGG
DB: KEGG
37.9 385.0 284 6.70e-74 rca:Rcas_2015
seg (db=Seg db_id=seg from=3 to=15) iprscan interpro
DB: Seg
0.0 0.0 0 0.0 rca:Rcas_2015
TEX PROTEIN-RELATEDTRANSCRIPTION ACCESSORY PROTEIN (S1 RNA BINDING DOMAIN) (db=HMMPanther db_id=PTHR10724 from=276 to=381 evalue=2.2e-13) iprscan interpro
DB: HMMPanther
0.0 0.0 0 2.00e+00 rca:Rcas_2015
RIBOSOMALS1 (db=FPrintScan db_id=PR00681 from=38 to=56 evalue=3.6e-26 interpro_id=IPR000110 interpro_description=Ribosomal protein S1 GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412)) iprscan interpro
DB: FPrintScan
0.0 0.0 0 3.00e+00 rca:Rcas_2015
no description (db=HMMSmart db_id=SM00316 from=36 to=105 evalue=3.9e-07 interpro_id=IPR022967 interpro_description=RNA-binding domain, S1) iprscan interpro
DB: HMMSmart
0.0 0.0 0 3.00e+00 rca:Rcas_2015
no description (db=Gene3D db_id=G3DSA:2.40.50.140 from=33 to=107 evalue=5.2e-06 interpro_id=IPR012340 interpro_description=Nucleic acid-binding, OB-fold) iprscan interpro
DB: Gene3D
0.0 0.0 0 5.00e+00 rca:Rcas_2015
(db=HMMPfam db_id=PF00575 from=36 to=105 evalue=7.4e-11 interpro_id=IPR003029 interpro_description=Ribosomal protein S1, RNA-binding domain GO=Molecular Function: RNA binding (GO:0003723)) iprscan interpro
DB: HMMPfam
0.0 0.0 0 7.00e+00 rca:Rcas_2015
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=291 to=388 evalue=9.4e-28 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like) iprscan interpro
DB: superfamily
0.0 0.0 0 9.00e+00 rca:Rcas_2015
S1 (db=ProfileScan db_id=PS50126 from=38 to=105 evalue=15.094 interpro_id=IPR003029 interpro_description=Ribosomal protein S1, RNA-binding domain GO=Molecular Function: RNA binding (GO:0003723)) iprscan interpro
DB: ProfileScan
0.0 0.0 0 1.50e+01 rca:Rcas_2015