Value | Algorithm | Source | Identity | Coverage | Bit score | Evalue | Cross references |
---|---|---|---|---|---|---|---|
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XSZ2_9BACT | similarity |
UNIREF
DB: UNIREF90 |
41.0 | 0.0 | 167 | 3.00e+00 | cte:CT0502 |
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:KKP54462.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;" |
UNIPROT
DB: UniProtKB |
100.0 | 196.0 | 382 | 3.30e-103 | A0A0G0DGH9_9BACT | |
ECF subfamily RNA polymerase sigma factor | similarity |
KEGG
DB: KEGG |
44.1 | 179.0 | 148 | 1.60e-33 | cte:CT0502 |
seg (db=Seg db_id=seg from=3 to=17) | iprscan |
interpro
DB: Seg |
0.0 | 0.0 | 0 | 0.0 | cte:CT0502 |
SIGMA70_ECF (db=PatternScan db_id=PS01063 from=57 to=88 evalue=0.0 interpro_id=IPR000838 interpro_description=RNA polymerase sigma factor 70, ECF, conserved site GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: PatternScan |
0.0 | 0.0 | 0 | 0.0 | cte:CT0502 |
(db=HMMPfam db_id=PF08281 from=133 to=184 evalue=1.0e-14 interpro_id=IPR013249 interpro_description=RNA polymerase sigma factor 70, region 4 type 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
0.0 | 0.0 | 0 | 1.00e+00 | cte:CT0502 |
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=9 to=121 evalue=4.5e-22 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma facto | iprscan |
interpro
DB: superfamily |
0.0 | 0.0 | 0 | 4.00e+00 | cte:CT0502 |
no description (db=Gene3D db_id=G3DSA:1.10.1740.10 from=18 to=101 evalue=4.7e-18) | iprscan |
interpro
DB: Gene3D |
0.0 | 0.0 | 0 | 4.00e+00 | cte:CT0502 |
(db=HMMPfam db_id=PF04542 from=34 to=101 evalue=5.5e-19 interpro_id=IPR007627 interpro_description=RNA polymerase sigma-70 region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
0.0 | 0.0 | 0 | 5.00e+00 | cte:CT0502 |
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=121 to=191 evalue=5.1e-13 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Funct | iprscan |
interpro
DB: superfamily |
0.0 | 0.0 | 0 | 5.00e+00 | cte:CT0502 |
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=29 to=189 evalue=6.3e-46 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:00169 | iprscan |
interpro
DB: HMMTigr |
0.0 | 0.0 | 0 | 6.00e+00 | cte:CT0502 |