ggKbase home page

NECEvent2014_4_7_scaffold_1023_3

Organism: NECEvent2014_4_7_Clostridium_7_2_43FAA-rel_28_17_lowerCov

near complete RP 48 / 55 MC: 6 BSCG 46 / 51 MC: 5 ASCG 15 / 38 MC: 2
Location: 2870..3664

Top 3 Functional Annotations

Value Algorithm Source
LPS biosynthesis protein n=1 Tax=Bacteroides fragilis CAG:47 RepID=R6YXY4_9BACE similarity UNIREF
DB: UNIREF100
  • Identity: 45.3
  • Coverage: 267.0
  • Bit_score: 230
  • Evalue 1.50e-57
LicD family protein {ECO:0000313|EMBL:EXY87461.1}; TaxID=1339283 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. 3996 N(B similarity UNIPROT
DB: UniProtKB
  • Identity: 46.1
  • Coverage: 267.0
  • Bit_score: 239
  • Evalue 4.60e-60
LicD family protein similarity KEGG
DB: KEGG
  • Identity: 39.3
  • Coverage: 270.0
  • Bit_score: 190
  • Evalue 6.50e-46

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Bacteroides fragilis → Bacteroides → Bacteroidales → Bacteroidia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 795
TTGAAGGAATTAAATGTAGAAGGAATAAGGAAAATACAACTTCAAATATTAAAAAATGTATCAGAATATTGTGATAAAAATAATATCAGATATTCGCTTGCATATGGCACATTAATAGGTTCTATAAGGCATAAGGGATATATACCTTGGGATGATGATATCGACATTGCAATGCCAAGACCTGACTATGATAACTTTATTATAAACTTTAATGGCTGTATAAAGGATTATTCTGTACATGCAGCAGAAATAGATTCAAATTTTTTATATACTTTTGCAAAAGTGTCATATGATAATTCCATACTTATTGAAGAAACCAATATAAAATATGATATAGGTATTAATATAGATATTTTTCCAATAGATGGACTACCAATTGACGATAATAAAAAAGTAATGAAAAAACAAAATTTGTATAGAAATCTAGCTAATTTTAAAAATGTTAAGTTAAGCTATAGTAGAAGCATATTTAAAAATATATTTTTATTATTAGGGAAAATACTTTTATTATGGCTACCTTTAAAAACAATCAATACTAAGATGATTGATAACTCGAAGACATACTCTTTTGAAAATGAAGATTATTGTTGTAATATTTCAACAGGCCTTATGGCTAATAAACCAATACCTAGAAAATATTTAGAAGAGTATATTGAATATGCTTTTGAAAATGAAAAATTTAATGTAAGTAAGTTTTATGATCAATGGTTATTAAGTATTTATGGAGATTATATGAAAATGCCACCAAAAGAAAAGCAAGTTACTCATCACAAATATAAAGCATATAAGAAATAA
PROTEIN sequence
Length: 265
LKELNVEGIRKIQLQILKNVSEYCDKNNIRYSLAYGTLIGSIRHKGYIPWDDDIDIAMPRPDYDNFIINFNGCIKDYSVHAAEIDSNFLYTFAKVSYDNSILIEETNIKYDIGINIDIFPIDGLPIDDNKKVMKKQNLYRNLANFKNVKLSYSRSIFKNIFLLLGKILLLWLPLKTINTKMIDNSKTYSFENEDYCCNISTGLMANKPIPRKYLEEYIEYAFENEKFNVSKFYDQWLLSIYGDYMKMPPKEKQVTHHKYKAYKK*