Advanced Search

GW2011_AR10_complete_1_30 Annotations

Value	Algorithm	Source	Identity	Coverage	Bit score	Evalue	Cross references
nucleolar protein 56	similarity	KEGG DB: KEGG	100.0	277.0	539	5.90e-151	agw:QT03_C0001G0031
rRNA biogenesis protein Nop56/Nop58; K14564 nucleolar protein 56 Tax=AR10		UNIPROT DB: UniProtKB	100.0	277.0	539	3.00e-150	ggdbv1_5240552
rRNA biogenesis protein Nop56/Nop58 n=1 Tax=Desulfurococcus mucosus (strain ATCC 35584 / DSM 2162 / JCM 9187 / O7/1) RepID=E8R9J4_DESM0	similarity	UNIREF DB: UNIREF90	40.0	0.0	223	6.00e+00	agw:QT03_C0001G0031
coiled-coil (db=Coil db_id=coil from=250 to=271 evalue=NA)	iprscan	interpro DB: Coil	0.0	0.0	0	0.0	agw:QT03_C0001G0031
seg (db=Seg db_id=seg from=3 to=16)	iprscan	interpro DB: Seg	0.0	0.0	0	0.0	agw:QT03_C0001G0031
(db=HMMPfam db_id=PF01798 from=125 to=266 evalue=1.4e-40 interpro_id=IPR002687 interpro_description=Pre-mRNA processing ribonucleoprotein, snoRNA-binding domain)	iprscan	interpro DB: HMMPfam	0.0	0.0	0	1.00e+00	agw:QT03_C0001G0031
Nop domain (db=superfamily db_id=SSF89124 from=49 to=261 evalue=1.8e-52)	iprscan	interpro DB: superfamily	0.0	0.0	0	1.00e+00	agw:QT03_C0001G0031
(db=HMMPfam db_id=PF08060 from=29 to=80 evalue=2.0e-13 interpro_id=IPR012976 interpro_description=NOSIC)	iprscan	interpro DB: HMMPfam	0.0	0.0	0	2.00e+00	agw:QT03_C0001G0031
NUCLEOLAR PROTEIN NOP56 (db=HMMPanther db_id=PTHR10894 from=27 to=266 evalue=5.2e-60)	iprscan	interpro DB: HMMPanther	0.0	0.0	0	5.00e+00	agw:QT03_C0001G0031

SCG Annotations
ASCG Pre-mRNA processing ribonucleoprotein

ggKBase is a service designed to assist in analyzing and integrating *omic data (e.g. metagenomics, proteomics, etc). The source code for ggKBase will be made available as an open source project.
You are encouraged to contact the development staff with issues related to usage of ggKBase. The ggKBase development staff as well as the members of the Banfield lab at the University of California, Berkeley, are not available to support outside research/computation requests.
We aim to make ggKBase the best resource possible and to make it accurate and available at all times; however, we cannot guarantee the correctness of any results, validity or integrity of the data, or the availability of the service: We cannot be held responsible for decisions made, losses suffered, or damages that resulted from using data from ggKBase.
We respect our user’s privacy and will not share any user registration details with anyone other than the ggKBase developers.
ggKBase is a social web site – it has mechanisms to share results and comments with other users of the system. As a registered user of ggKBase, you agree to respect the rights of other users and conduct yourself in a professional manner with courtesy and collegiality towards your fellow users. We reserve the right to delete users found not upholding these standards.
We reserve the right to reject inappropriate data submissions. As a User, you agree not to submit data that is not your own and you agree that any data you do submit is being submitted specifically for the purposes of analyzing using ggKBase.
ggKBase and its underlying servers and systems are properly administrated and backed up. However, ggKBase is not responsible for data loss or work loss as a result of system or hardware failures or criminal activity.
We reserve the right to perform additional data analysis to improve ggKBase, and we will not release user-contributed data without consent of the user.
Users of ggKBase are expected to properly cite any published work.
We reserve the right at any time to modify the Terms of Service for ggKBase. Modifications to these Terms will be effective immediately and we will make a reasonable effort to contact users via email of any changes. If you continue using ggKBase after an amendment to the Terms of Service, we assume you have read and accepted the changes.