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SCN_Thiobacillus_338x_old

SCN-stock_Hydrogenophilales_63_336
In projects: SCN-stock

Consensus taxonomy: Hydrogenophilales  →  Betaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCN_Unknown Curated version: SCN_Thiobacillus_338x

Properties

Avg. coverage: 336.23 Longest contig: 22.77 Kbp Bin length: 987.34 Kbp GC content: 63.42 %
Contigs count: 118 Features count: 1111 rRNAs count: 0 tRNAs count: 13

Genome completeness

partial RP 40 / 55 MC: 1 BSCG 38 / 51 MC: 1 ASCG 7 / 38 MC: 1
Displaying items 1-50 of 118 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cnbg_combo_scaffold_3009 Thio338_100
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
4 5503 bp 63.47 327.49 69.40
cnbg_combo_scaffold_2429 Thio338_63
Species: Aromatoleum aromaticum (50%)
4 6679 bp 65.41 341.97 77.21
cnbg_combo_scaffold_4124 Thio338_65
Order: Hydrogenophilales (55.56%)
9 6673 bp 61.37 321.19 81.42
cnbg_combo_scaffold_3063 Thio338_80
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (55.56%)
9 6162 bp 59.92 305.79 82.33
cnbg_combo_scaffold_2896 Thio338_111
Order: Hydrogenophilales (88.89%)
9 5186 bp 65.18 371.29 82.66
cnbg_combo_scaffold_1851 Thio338_40
Order: Hydrogenophilales (54.55%)
11 8448 bp 61.51 310.49 83.23
cnbg_combo_scaffold_3973 Thio338_94
Order: Burkholderiales (57.14%)
7 5607 bp 70.45 307.78 83.41
cnbg_combo_scaffold_1969 Thio338_39
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (54.55%)
11 8734 bp 64.04 349.40 83.54
cnbg_combo_scaffold_2377 Thio338_20
Order: Hydrogenophilales (60%)
15 11830 bp 62.66 344.73 83.76
cnbg_combo_scaffold_1092 Thio338_14
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (69.23%)
13 12754 bp 63.01 336.33 84.30
cnbg_combo_scaffold_2253 Thio338_73
Order: Hydrogenophilales (57.14%)
7 6387 bp 61.94 307.30 84.31
cnbg_combo_scaffold_4685 Thio338_99
Order: Hydrogenophilales (71.43%)
7 5504 bp 64.06 287.35 85.03
cnbg_combo_scaffold_3035 Thio338_119
Order: Hydrogenophilales (85.71%)
7 5013 bp 61.30 289.55 85.04
cnbg_combo_scaffold_2812 Thio338_105
Species: GWE1_Thiobacillus_62_9_curated (50%)
6 5329 bp 63.45 356.07 85.12
cnbg_combo_scaffold_4961 Thio338_108
Species: GWE1_Thiobacillus_62_9_curated (50%)
4 5253 bp 65.39 394.57 85.38
cnbg_combo_scaffold_3731 Thio338_52
Order: Hydrogenophilales (90.91%)
11 7531 bp 62.13 339.18 85.73
cnbg_combo_scaffold_2134 Thio338_64
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (66.67%)
9 6676 bp 61.14 337.24 87.06
cnbg_combo_scaffold_1723 Thio338_37
Order: Hydrogenophilales (100%)
7 9087 bp 63.12 330.98 87.32
cnbg_combo_scaffold_2958 Thio338_115
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (83.33%)
6 5119 bp 61.63 292.87 87.50
cnbg_combo_scaffold_3099 Thio338_32
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (60%)
10 9977 bp 64.67 328.29 87.71
cnbg_combo_scaffold_1732 Thio338_43
Species: Thiobacillus denitrificans (54.55%)
11 8096 bp 64.29 378.15 87.75
cnbg_combo_scaffold_1200 Thio338_4
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (70%)
20 18119 bp 62.57 315.80 88.10
cnbg_combo_scaffold_3682 Thio338_51
Order: Hydrogenophilales (85.71%)
7 7590 bp 64.36 377.68 88.18
cnbg_combo_scaffold_2152 Thio338_61
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
10 7008 bp 61.80 355.82 88.31
cnbg_combo_scaffold_1929 Thio338_57
Class: Betaproteobacteria (80%)
10 7308 bp 63.29 378.53 88.59
cnbg_combo_scaffold_2946 Thio338_114
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (75%)
8 5126 bp 61.16 281.41 88.96
cnbg_combo_scaffold_1107 Thio338_11
Order: Hydrogenophilales (78.95%)
19 13014 bp 60.20 294.10 89.03
cnbg_combo_scaffold_1554 Thio338_21
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (75%)
12 11646 bp 64.00 342.07 90.19
cnbg_combo_scaffold_3473 Thio338_68
Order: Hydrogenophilales (100%)
10 6523 bp 63.73 323.92 90.23
cnbg_combo_scaffold_1172 Thio338_10
Order: Hydrogenophilales (93.33%)
15 13062 bp 64.01 336.17 90.65
cnbg_combo_scaffold_1459 Thio338_35
Phylum: Proteobacteria (88.89%)
9 9441 bp 64.94 377.88 90.69
cnbg_combo_scaffold_1181 Thio338_15
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (66.67%)
12 12232 bp 65.41 367.13 90.84
cnbg_combo_scaffold_2836 Thio338_106
Species: GWE1_Thiobacillus_62_9_curated (100%)
3 5292 bp 60.92 286.21 90.93
cnbg_combo_scaffold_1009 Thio338_5
Order: Hydrogenophilales (62.5%)
16 17471 bp 63.81 311.86 90.96
cnbg_combo_scaffold_1873 Thio338_53
Order: Hydrogenophilales (50%)
8 7522 bp 62.99 311.45 90.97
cnbg_combo_scaffold_1402 Thio338_17
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (53.85%)
13 12198 bp 60.69 331.14 91.05
cnbg_combo_scaffold_1980 Thio338_59
Order: Hydrogenophilales (100%)
9 7162 bp 65.32 369.20 91.06
cnbg_combo_scaffold_2959 Thio338_116
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (57.14%)
7 5116 bp 63.19 305.90 91.18
cnbg_combo_scaffold_5171 Thio338_110
Order: Hydrogenophilales (50%)
6 5201 bp 62.60 329.76 91.19
cnbg_combo_scaffold_1391 Thio338_19
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (72.73%)
11 12033 bp 62.95 348.23 91.30
cnbg_combo_scaffold_1887 Thio338_54
Order: Hydrogenophilales (100%)
6 7466 bp 62.66 311.77 91.66
cnbg_combo_scaffold_3262 Thio338_118
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (66.67%)
9 5048 bp 63.91 362.22 91.76
cnbg_combo_scaffold_2266 Thio338_58
Order: Hydrogenophilales (88.89%)
9 7224 bp 63.70 387.76 91.99
cnbg_combo_scaffold_2192 Thio338_69
Order: Hydrogenophilales (80%)
5 6519 bp 61.88 321.98 92.18
cnbg_combo_scaffold_988 Thio338_6
Order: Hydrogenophilales (88.24%)
17 14284 bp 59.50 299.03 92.22
cnbg_combo_scaffold_2434 Thio338_86
Class: Betaproteobacteria (57.14%)
7 5981 bp 62.31 362.28 92.39
cnbg_combo_scaffold_772 Thio338_2
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
28 22706 bp 62.05 318.43 92.53
cnbg_combo_scaffold_2471 Thio338_88
Species: GWE1_Thiobacillus_62_9_curated (50%)
8 5913 bp 63.54 358.21 92.59
cnbg_combo_scaffold_2892 Thio338_97
Order: Hydrogenophilales (55.56%)
9 5556 bp 63.88 355.78 92.60
cnbg_combo_scaffold_1497 Thio338_34
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (62.5%)
16 9647 bp 62.99 343.33 92.83
Displaying items 1-50 of 118 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.