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bjp_ig2103_scaffold_3_curated

Search features with annotation key words

Displaying items 451-480 of 502 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
bjp_ig2103_scaffold_3_curated_450
unknown

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comp(548261..549121)
DNA (861bp) protein (287aa)
RNA polymerase sigma factor id=3303577 bin=GWC2_ACD39_50_8 species=Thermovirga lienii genus=Thermovirga taxon_order=Synergistales taxon_class=Synergistia phylum=Synergistetes tax=GWC2_ACD39_50_8 organism_group=ACD39
RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase sigma factor, sigma-70 family
bjp_ig2103_scaffold_3_curated_451
unknown

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comp(549428..551434)
DNA (2007bp) protein (669aa)
coiled-coil 163..240 id=45626 bin=ACD39 species=ACD39 genus=ACD39 taxon_order=ACD39 taxon_class=ACD39 phylum=unknown tax=ACD39 organism_group=Unknown_CP organism_desc=unknown rbh
bjp_ig2103_scaffold_3_curated_452
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(551427..554039)
DNA (2613bp) protein (871aa)
DNA mismatch repair protein MutS n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LTA5_CLOCD rbh
DNA mismatch repair protein MutS; K03555 DNA mismatch repair protein MutS rbh
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00184333}; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45).;"
bjp_ig2103_scaffold_3_curated_453
Thermoanaerobacterium thermosaccharolyticum, Thermoanaerobacterium, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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comp(554392..555504)
DNA (1113bp) protein (371aa)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=698948 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Thermoanaerobacterium.;" source="Thermoanaerobacterium thermosaccharolyticum M0795.;"
Holliday junction DNA helicase RuvB n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI000316AA89 rbh
Holliday junction DNA helicase subunit RuvB rbh
bjp_ig2103_scaffold_3_curated_454
unknown

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comp(555507..556118)
DNA (612bp) protein (204aa)
ruvA; Holliday junction DNA helicase RuvA; K03550 holliday junction DNA helicase RuvA [EC:3.6.4.12]
Holliday junction ATP-dependent DNA helicase RuvA id=4815580 bin=GWC2_Deltaproteobacteria_55_46 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Deltaproteobacteria_55_46 organism_group=Deltaproteobacteria organism_desc=Clade sibling to the Geobacter/Pelobacter
bjp_ig2103_scaffold_3_curated_455
delta proteobacterium NaphS2, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(556301..557062)
DNA (762bp) protein (254aa)
Probable transcriptional regulatory protein NPH_1078 n=1 Tax=delta proteobacterium NaphS2 RepID=D8F3Q5_9DELT
Probable transcriptional regulatory protein NPH_1078 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=88274 species="Bacteria; Proteobacteria; Deltaproteobacteria.;" source="delta proteobacterium NaphS2.;"
DNA-binding regulatory protein, YebC/PmpR family
bjp_ig2103_scaffold_3_curated_456
unknown

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comp(557169..557924)
DNA (756bp) protein (252aa)
id=4795852 bin=GWC2_ACD39_50_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_ACD39_50_8 organism_group=ACD39
bjp_ig2103_scaffold_3_curated_457
unknown

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558036..558155
DNA (120bp) protein (40aa)

This feature has no annotations

bjp_ig2103_scaffold_3_curated_458
unknown

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558454..559329
DNA (876bp) protein (292aa)
dapA2; dihydrodipicolinate synthase (EC:4.2.1.52); K01714 dihydrodipicolinate synthase [EC:4.2.1.52]
Dihydrodipicolinate synthase id=4795851 bin=GWC2_ACD39_50_8 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_ACD39_50_8 organism_group=ACD39
bjp_ig2103_scaffold_3_curated_459
unknown

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559333..560148
DNA (816bp) protein (272aa)
Putative uncharacterized protein id=4795849 bin=GWC2_ACD39_50_8 species=Bacillus sp. 1NLA3E genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_ACD39_50_8 organism_group=ACD39
hypothetical protein
bjp_ig2103_scaffold_3_curated_460
unknown

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560145..561437
DNA (1293bp) protein (431aa)
YbbR family protein id=4795848 bin=GWC2_ACD39_50_8 species=Alkaliphilus metalliredigens genus=Alkaliphilus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_ACD39_50_8 organism_group=ACD39
YbbR family protein
bjp_ig2103_scaffold_3_curated_461
unknown

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561448..563772
DNA (2325bp) protein (775aa)
Uncharacterized protein id=4795847 bin=GWC2_ACD39_50_8 species=Methanosarcina barkeri genus=Methanosarcina taxon_order=Methanosarcinales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWC2_ACD39_50_8 organism_group=ACD39
hypothetical protein
bjp_ig2103_scaffold_3_curated_462
unknown

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563765..564892
DNA (1128bp) protein (376aa)
DNA protecting protein DprA id=4795846 bin=GWC2_ACD39_50_8 species=unknown genus=Thermoanaerobacterium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_ACD39_50_8 organism_group=ACD39
DNA protecting protein DprA; K04096 DNA processing protein
bjp_ig2103_scaffold_3_curated_463
unknown

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564903..565391
DNA (489bp) protein (163aa)
id=4795845 bin=GWC2_ACD39_50_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_ACD39_50_8 organism_group=ACD39
bjp_ig2103_scaffold_3_curated_464
unknown

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565397..567733
DNA (2337bp) protein (779aa)
DNA topoisomerase I (EC:5.99.1.2); K03168 DNA topoisomerase I [EC:5.99.1.2] rbh
DNA topoisomerase id=4795844 bin=GWC2_ACD39_50_8 species=ACD39 genus=ACD39 taxon_order=ACD39 taxon_class=ACD39 phylum=unknown tax=GWC2_ACD39_50_8 organism_group=ACD39
bjp_ig2103_scaffold_3_curated_465
unknown

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567714..569048
DNA (1335bp) protein (445aa)
methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase (EC:2.1.1.74); K04094 methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74] rbh
Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO id=4795819 bin=GWC2_ACD39_50_8 species=ACD39 genus=ACD39 taxon_order=ACD39 taxon_class=ACD39 phylum=unknown tax=GWC2_ACD39_50_8 organism_group=ACD39
bjp_ig2103_scaffold_3_curated_466
unknown

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comp(569394..573023)
DNA (3630bp) protein (1210aa)
PKD domain containing protein id=4795817 bin=GWC2_ACD39_50_8 species=Cellulomonas fimi genus=Cellulomonas taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_ACD39_50_8 organism_group=ACD39
hypothetical protein
bjp_ig2103_scaffold_3_curated_467
unknown

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comp(573128..573907)
DNA (780bp) protein (260aa)

This feature has no annotations

bjp_ig2103_scaffold_3_curated_468
unknown

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comp(574288..576369)
DNA (2082bp) protein (694aa)
aoe:Clos_0453 translation elongation factor G; K02355 elongation factor EF-G [EC:3.6.5.3] id=49233 bin=ACD39 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=ACD39 organism_group=Unknown_CP organism_desc=unknown rbh
translation elongation factor G; K02355 elongation factor G rbh
bjp_ig2103_scaffold_3_curated_469
unknown

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576577..578625
DNA (2049bp) protein (683aa)
Transglycosylase SLT domain protein n=2 Tax=Thermoanaerobacteraceae RepID=B7R6I8_9THEO id=49185 bin=ACD39 species=unknown genus=unknown taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=ACD39 organism_group=Unknown_CP organism_desc=unknown rbh
lytic transglycosylase catalytic subunit
bjp_ig2103_scaffold_3_curated_470
unknown

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comp(578859..579080)
DNA (222bp) protein (74aa)
Putative DNA-binding domain 5..69 id=32431 bin=ACD28 species=ACD28 genus=ACD28 taxon_order=ACD28 taxon_class=ACD28 phylum=PER tax=ACD28 organism_group=PER (Peregrinibacteria) organism_desc=PER
bjp_ig2103_scaffold_3_curated_471
unknown

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579451..579810
DNA (360bp) protein (120aa)
Anti-sigma factor antagonist SpoIIaa id=44543 bin=ACD39 species=ACD39 genus=ACD39 taxon_order=ACD39 taxon_class=ACD39 phylum=unknown tax=ACD39 organism_group=Unknown_CP organism_desc=unknown
bjp_ig2103_scaffold_3_curated_472
unknown

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579828..581420
DNA (1593bp) protein (531aa)
Putative uncharacterized protein id=4772731 bin=GWC2_ACD39_50_8 species=ACD39 genus=ACD39 taxon_order=ACD39 taxon_class=ACD39 phylum=unknown tax=GWC2_ACD39_50_8 organism_group=ACD39
hypothetical protein
bjp_ig2103_scaffold_3_curated_473
Thermus aquaticus, Thermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

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581516..583348
DNA (1833bp) protein (611aa)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] {ECO:0000256|HAMAP-Rule:MF_00164, ECO:0000256|SAAS:SAAS00039584}; EC=2.6.1.16 {ECO:0000256|HAMAP-Rule:MF_00164};; D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; GFAT {ECO:0000256|HAMAP-Rule:MF_00164}; Glucosamine-6-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00164}; Hexosephosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; L-glutamine--D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_0016
glucosamine--fructose-6-phosphate aminotransferase (isomerizing) (EC:2.6.1.16); K00820 glucosamine--fructose-6-phosphate aminotransferase (isomerizing) [EC:2.6.1.16] rbh
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] n=1 Tax=Thermus aquaticus Y51MC23 RepID=B7A8J4_THEAQ rbh
bjp_ig2103_scaffold_3_curated_474
Desulfitobacterium metallireducens, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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583639..586128
DNA (2490bp) protein (830aa)
Endonuclease MutS2 {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084206}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084246};; TaxID=871968 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium.;" source="Desulfitobacterium metallireducens DSM 15288.;"
hypothetical protein n=1 Tax=Cohnella laeviribosi RepID=UPI0003655DB0 rbh
MutS2 protein; K07456 DNA mismatch repair protein MutS2 rbh
bjp_ig2103_scaffold_3_curated_475
Tepidanaerobacter acetatoxydans, Tepidanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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586872..588326
DNA (1455bp) protein (485aa)
Putative RNA polymerase sigma-54 factor n=1 Tax=Tepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1) RepID=F4LQV3_TEPAE rbh
RNA polymerase sigma 54 subunit RpoN; K03092 RNA polymerase sigma-54 factor rbh
Putative RNA polymerase sigma-54 factor {ECO:0000313|EMBL:CCP26954.1}; TaxID=1209989 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Tepidanaerobacter.;" source="Tepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1).;"
bjp_ig2103_scaffold_3_curated_476
Herbaspirillum sp. CF444, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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588405..589259
DNA (855bp) protein (285aa)
Polysaccharide export protein EpsE n=1 Tax=Herbaspirillum sp. CF444 RepID=J2TZK0_9BURK
Polysaccharide export protein EpsE {ECO:0000313|EMBL:EJL84262.1}; Flags: Precursor;; TaxID=1144319 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. CF444.;"
capsule polysaccharide export protein; K01991 polysaccharide export outer membrane protein
bjp_ig2103_scaffold_3_curated_477
Methylovorus glucosotrophus, Methylovorus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

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589271..589708
DNA (438bp) protein (146aa)
Type II secretion system protein G n=1 Tax=Methylovorus sp. (strain SIP3-4) RepID=C6XCK5_METSD
type II secretion system protein G; K02456 general secretion pathway protein G
Type II secretion system protein G {ECO:0000313|EMBL:ACT50280.1}; TaxID=582744 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylovorus.;" source="Methylovorus glucosetrophus (strain SIP3-4).;"
bjp_ig2103_scaffold_3_curated_478
Desulfonatronospira thiodismutans, Desulfonatronospira, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

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589777..590943
DNA (1167bp) protein (389aa)
Type II secretion system F domain protein n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=D6SNG8_9DELT
Type II secretion system F domain protein {ECO:0000313|EMBL:EFI34294.1}; TaxID=555779 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfohalobiaceae; Desulfonatronospira.;" source="Desulfonatronospira thiodismutans ASO3-1.;"
Type II secretion system F domain protein; K02653 type IV pilus assembly protein PilC
bjp_ig2103_scaffold_3_curated_479
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(591069..591392)
DNA (324bp) protein (108aa)
PEMK-like protein; K07171 mRNA interferase [EC:3.1.-.-]
mRNA interferase {ECO:0000256|PIRNR:PIRNR033490}; EC=3.1.-.- {ECO:0000256|PIRNR:PIRNR033490};; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
mRNA interferase n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2IUS0_POLGS
Displaying items 451-480 of 502 in total

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