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13_1_20CM_4_Rokubacteria_70_13

In projects: 13_1_20CM_4  |  angelo_ncbi_2016  |  rokubacteria_ggkbase  |  meta-analysis_of_species_overlap_in_grassland_soils_environments

Consensus taxonomy: Rokubacteria  →  Bacteria

Metagenomic Context

Parent: 13_1_20cm_4_UNK

Properties

Avg. coverage: 13.21 Longest contig: 12.61 Kbp Bin length: 650.91 Kbp GC content: 70.38 %
Contigs count: 256 Features count: 814 rRNAs count: 0 tRNAs count: 7

Genome completeness

partial RP 21 / 55 MC: 3 BSCG 25 / 51 MC: 3 ASCG 4 / 38 MC: 2

Description

formerly known as 13_1_20CM_4_temporary

Displaying items 151-200 of 256 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
13_1_20cm_4_scaffold_142146
Species: R_Rokubacteria_71_18 (50%)
2 1393 bp 72.00 12.07 99.50
13_1_20cm_4_scaffold_38431
Species: Pyrinomonas methylaliphatogenes (50%)
2 2441 bp 56.25 17.79 96.11
13_1_20cm_4_scaffold_73231
Species: RLO_Rokubacteria_71_22 (100%)
2 1855 bp 71.54 12.18 98.65
13_1_20cm_4_scaffold_31592
Species: RLO_RIF_CHLX_71_12 (100%)
2 2651 bp 65.33 13.26 98.91
13_1_20cm_4_scaffold_258516
Species: RBG_13_Chloroflexi_60_13_curated (50%)
2 1025 bp 66.73 13.71 100.10
13_1_20cm_4_scaffold_220951
Species: GWC2_Rokubacteria_70_16_curated (50%)
2 1132 bp 59.19 14.41 99.38
13_1_20cm_4_scaffold_242653
Species: RLO_Entotheonella_69_37 (50%)
2 1069 bp 68.01 18.78 100.19
13_1_20cm_4_scaffold_224662
Species: Candidatus Entotheonella sp. TSY2 (50%)
2 1121 bp 63.25 11.87 98.75
13_1_20cm_4_scaffold_238487
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1849 bp 68.20 12.35 87.94
13_1_20cm_4_scaffold_244939
Species: RLO_Betaproteobacteria_65_14 (100%)
2 1062 bp 69.02 17.02 100.28
13_1_20cm_4_scaffold_262910
Species: RLO_Gemmatimonadetes_68_9 (50%)
2 1013 bp 73.05 13.63 92.10
13_1_20cm_4_scaffold_206924
Species: R_Rokubacteria_73_56 (50%)
2 1173 bp 71.87 14.76 100.00
13_1_20cm_4_scaffold_45838
Species: R_Rokubacteria_73_56 (100%)
2 2267 bp 72.61 11.74 98.99
13_1_20cm_4_scaffold_45378
Species: RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated (50%)
2 2278 bp 61.28 12.34 93.11
13_1_20cm_4_scaffold_53672
Species: R_Acidobacteria_61_28 (50%)
2 2119 bp 69.09 12.67 98.82
13_1_20cm_4_scaffold_250470
Species: GWA2_Rokubacteria_73_35_curated (100%)
2 1047 bp 72.87 13.90 99.71
13_1_20cm_4_scaffold_113855
Species: RLO_Rokubacteria_71_22 (50%)
2 1536 bp 70.64 15.52 100.20
13_1_20cm_4_scaffold_54375
Species: GWA2_Rokubacteria_73_35_curated (100%)
2 2107 bp 71.43 14.06 98.67
13_1_20cm_4_scaffold_141965
Species: R_Rokubacteria_73_56 (50%)
2 1394 bp 71.66 12.24 100.29
13_1_20cm_4_scaffold_182287
Species: GWA2_Rokubacteria_73_35_curated (100%)
2 1247 bp 75.30 13.49 91.66
13_1_20cm_4_scaffold_42404
Species: R_Rokubacteria_73_56 (100%)
2 2343 bp 69.95 12.53 100.38
13_1_20cm_4_scaffold_116630
Species: GWA2_Rokubacteria_73_35_curated (50%)
2 1520 bp 72.37 14.20 98.68
13_1_20cm_4_scaffold_56692
Species: RLO_Rokubacteria_71_22 (50%)
2 2070 bp 77.00 11.88 68.41
13_1_20cm_4_scaffold_252802
Species: GWA2_Rokubacteria_73_35_curated (50%)
2 1737 bp 70.41 13.29 68.39
13_1_20cm_4_scaffold_173085
Species: RLO_Deltaproteobacteria_60_19 (50%)
2 1277 bp 65.54 12.78 99.37
13_1_20cm_4_scaffold_25488
Species: GWA2_Rokubacteria_73_35_curated (100%)
2 2900 bp 72.41 13.16 99.10
13_1_20cm_4_scaffold_137836
Species: Rubrobacter radiotolerans (50%)
2 1412 bp 67.78 12.62 92.42
13_1_20cm_4_scaffold_258335
Species: GWA2_Rokubacteria_70_23_curated (50%)
2 1025 bp 69.37 11.75 88.39
13_1_20cm_4_scaffold_184617
Species: Candidatus Entotheonella sp. TSY1 (50%)
2 1240 bp 72.26 13.36 95.32
13_1_20cm_4_scaffold_170333
Species: RLO_Gemmatimonadetes_68_9 (50%)
2 1286 bp 72.47 13.66 97.05
13_1_20cm_4_scaffold_188307
Species: R_Rokubacteria_73_56 (50%)
2 1228 bp 74.27 12.47 95.03
13_1_20cm_4_scaffold_183239
Species: RLO_Rokubacteria_71_22 (100%)
2 1244 bp 71.95 14.12 100.32
13_1_20cm_4_scaffold_107921
Species: R_Rokubacteria_68_19 (50%)
2 1572 bp 68.32 11.82 87.79
13_1_20cm_4_scaffold_57405
Species: GWA2_Rokubacteria_73_35_curated (100%)
2 2058 bp 67.44 13.66 99.56
13_1_20cm_4_scaffold_120343
Species: R_Rokubacteria_73_56 (50%)
2 1500 bp 71.00 11.88 93.40
13_1_20cm_4_scaffold_77456
Species: GWA2_Rokubacteria_73_35_curated (100%)
2 1811 bp 66.43 13.31 99.89
13_1_20cm_4_scaffold_74002
Species: GWA2_Rokubacteria_73_35_curated (50%)
2 1846 bp 69.99 13.05 96.21
13_1_20cm_4_scaffold_256288
Species: RLO_PLX_64_10 (50%)
2 1031 bp 71.48 11.69 100.39
13_1_20cm_4_scaffold_43822
Species: RBG_19FT_COMBO_Euryarchaeota_69_17_curated (50%)
2 2310 bp 65.24 14.56 96.49
13_1_20cm_4_scaffold_233017
Species: R_Rokubacteria_73_56 (50%)
2 1746 bp 69.53 12.51 100.00
13_1_20cm_4_scaffold_248460
Species: GWA2_Rokubacteria_73_35_curated (50%)
2 1052 bp 72.24 11.93 100.10
13_1_20cm_4_scaffold_28808
Species: R_Rokubacteria_71_18 (50%)
2 2758 bp 73.28 11.92 93.87
13_1_20cm_4_scaffold_70324
Species: Bradyrhizobium sp. LTSPM299 (50%)
2 1889 bp 65.96 17.14 89.89
13_1_20cm_4_scaffold_269260
Species: R_Rokubacteria_73_56 (50%)
2 1695 bp 74.40 12.14 98.23
13_1_20cm_4_scaffold_107944
Species: GWA2_Rokubacteria_73_35_curated (50%)
2 1572 bp 70.29 14.21 97.71
13_1_20cm_4_scaffold_82080
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1767 bp 69.67 17.19 95.93
13_1_20cm_4_scaffold_93372
Species: GWA2_Rokubacteria_73_35_curated (50%)
2 1672 bp 72.31 14.41 95.81
13_1_20cm_4_scaffold_253543
Species: GWA2_Rokubacteria_73_35_curated (50%)
2 1038 bp 65.41 12.57 96.24
13_1_20cm_4_scaffold_157010
Species: R_Rokubacteria_73_56 (100%)
2 1333 bp 69.09 12.62 99.93
13_1_20cm_4_scaffold_127060
Species: R_Rokubacteria_68_19 (50%)
2 1465 bp 69.90 14.56 94.81
Displaying items 151-200 of 256 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.