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SCN18_13_7_16_R1_B_scaffold_523_29

Organism: SCN18_13_7_16_R1_B_SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41_62_16

near complete RP 49 / 55 BSCG 51 / 51 ASCG 12 / 38
Location: 31806..35297

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 61.8
  • Coverage: 1172.0
  • Bit_score: 1453
  • Evalue 0.0
Transcription-repair-coupling factor n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HXQ5_PARL1 similarity UNIREF
DB: UNIREF100
  • Identity: 62.3
  • Coverage: 1170.0
  • Bit_score: 1443
  • Evalue 0.0
transcription-repair coupling factor similarity KEGG
DB: KEGG
  • Identity: 62.3
  • Coverage: 1170.0
  • Bit_score: 1443
  • Evalue 0.0

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Taxonomy

SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41 → SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41 → SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41 → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 3492
GTGGAACGACTGAACTACATCGCCAAGGCCGACGGCCGCTTTGCGCTGACCGGCGCGCCTGAGGGGTATGACGCCTATCTTGCGGCCGAGGCCGCGCGCCGCGGCAAGCAGGTGGTATTGTTCATTGCCGCCGATGGCGTGCACGCCGCCGCGATCGAAGAAGCGCTGCGGTTTTTTGATGCCGGGCTTCAGGTGCTGCCGTTCCCGGCGTGGGATTGCCTGCCTTACGACCGCGTTTCACCAAAGTCCGATCTGGAAGGGCGCCGCCTCGCCACGCTGGCCGCGCTTGCGCGCCGCACGAAGGACAGTGCGCCGGCCGTGGTGGTCGCCACCGTCAACGCCGTGTTGCAGCGTGTGCCGCCGAAAGATGCGATTGCACAAGCCAGTTTCTTCGCCCATGCCGGCAAGGATGTGGACCGCGATGCGCTGATCGTGTTTCTCGCCCGCAATGGCTACACCCGCGCCAGCACGGTGCGTGAACCTGGCGATTACGCGCTGCGCGGCGGCATTGTCGATCTGTGGCCGCCGGGTGAGGAAGCGCCGCTGCGGCTGGATTTTTTCGGCAGCGGGCTTGAAACCATCCGCCGCTTCGATGCCGAAACCCAGTTGTCGCGCGATACGGTTTCCGGAATCGAATTGCTGCCGGCCAGCGAAGCCCCGCTCGATCGCCAATCCATCAGCCTCTTCCGCGAAGGCTATGTTGCCACCTTCGGTCCGGCGGGACATGACGATCCGCTTTATGAATCGGTCAGCGCTGGCCGCAAACATCAGGGGATGGAGCATTGGCTGCCGCTGTTCTATTCCCACCTCGATACGCTGTTCGACTACGCGCCGCGTGCGCTGGTGTTTCTGTCGCATCAGGCGGTGGAGGCGAAGGACGCTCGCCTGTCCCTGATCACCGACTATTACGAAACCCGCGAACAGATGCGGCGCAGCGCCTATGATAGCAAGAACCCGATCAAGGGGGCGCCTTACAAGCCGCTGCCGCCGGACCGGCTCTATCTTTCCGGTGCGGAATGGGACGAACGGCTCGCCAAGCATCCCTTGCGCCAGCTTTCGCCGTTCCATGCGCCGGAAAGCAAAAAATCGCTCGATGCTGGCGGCAAGGCGGGGCGCGATTTCGCGCCCGAACGCGCCCAGGGCCGTGTCAATGTCTTTGAAGCGGCGGCGAAACATGTGAAGGCGTTGCAGGCGGCGGGCACGCGCGTCGTGCTCACCGCCTGGACCGAAGGCTCGGCGGAGCGGTTGGGCGGTGTTCTGGCCGACCATGGTCTCGGGCCTGCGCGCGCCGTTTCCGGCTGGGCCGATGTGCAGACCCTGCACAAGGGCGCTGTGGGCATTGCCGTTCTGGGTCTGGAGCATGGCTTTGAGACGCCGGATTTCGCCATTGTCGCGGAACAGGACATCCTCGGCGACCGCATGGTCCGTGCACGGACCAAAACGCGCAAGGCGCAGAATTTCTTGCAGGAAGCCTCAAGCCTCGCGCCCGGCGATCTCGTCACCCACATCGAACACGGCATCGGCCGTTATCTGGGGCTCAAGACACTCGATGTTGCGGGCGCGCCGCATGATTGCCTGGCGCTGCAATATGACGGCGGCAAGCTGTTCCTGCCGGTGGAGAATATCGAACTTCTAACGCGCTATGGCGCCGATGAAGGCACGGCCCAGCTTGACCGGCTTGGCGGCGCCGGCTGGCAGCAGCGCAAAGCCCGCATGAAGGAGCGCGTGCGCGAAATCGCGGCCGAGCTGATTGCGATTGCCGCCGCGCGCGAATTGAAAACACTTCCGGCGATTGAAGCGCCGCAAGGGCTTTATGACGAATTCTGCGCCCGCTTCCCCTATCAGGAGACGGAGGATCAGGAAAAAGCCATTGCCGATGTGGTGTCCGACCTCGCCCACGGCCGGCCGATGGATCGCCTTGTCTGCGGCGATGTCGGATTCGGCAAAACCGAAGTGGCCTTGCGCGCGGCCTTTGTGGTGGCGATGTCGGGGGAACAGGTCGCCGTGGTGGCACCCACCACGCTGCTCGCCCGCCAGCACGCGCGCAATTTCGCCGAACGGTTTCAGGGTTTCCCGATCAAGGTGCGGCAATTGTCGCGTTTCGTCGATGCGAAGGAAGCACGCGAAACCAAGGCCGGCCTTGCTTCGGGCGATGTGAATATTGTGGTGGGCACGCATGCGTTGCTTGCGAAGTCGATCAGCTTCTCCAATCTTGGCCTCGTCATCGTCGATGAAGAACAACATTTCGGTGTCACCCATAAGGAACGGCTGAAATCGTTGAAGGCCGACGTGCATGTGCTGACCCTGACGGCGACGCCCATTCCACGCACCTTGCAACTGGCGCTTTCCGGTGTGCGCGATCTCTCGCTGATCACCACGCCGCCGATCGACCGGCTGGCGGTGCGCACCTTCATCACACCATTCGATCCCCTGGTGCTGCGTGAGGCGCTGCTGCGCGAACATTATCGCGGCGGGCAAAGTTTCTATGTCTGCCCGCGCATCGCCGATCTGCGCGATGCCGAACAATTCCTGAAAGACACGGTGCCGGAGGTGAAGGCCGCCGTCGCCCATGGCCAGATGTCGGCCACCCATCTGGAGGAGGTGATGACCGCCTTCTACGAACGTCAGGTGGATGTGCTGATCTCGACCAACATCGTTGAAAGCGGGCTGGACATTCCAACCGCCAACACCCTTCTCGTGCATCGCGCCGATATGTTCGGCTTGGCCCAGCTTTATCAATTGCGTGGCCGCATCGGGCGGGCCAAACAGCGGGCTTACGCCTATCTGACCACGCCGGCCGAACGCAAACTGACCGAGGCGGCGGAGCGGCGGCTGCAGGTGCTGCAATCGCTGGATCAACTGGGTGCCGGTTTTTCGGTCGCCAGCCACGATCTCGATATCCGCGGCGCCGGCAATCTTCTGGGCGAAGAACAATCCGGCCATGTCCGCGAAGTGGGCATCGAGCTTTATCAGGAAATGCTGGAAGAAGCCGTTTCGCAGATGCGCGCGGGTGGCACGGGTGATGATCTGCCGGATGAATGGTCGCCGCAGATCAATATCGGCGCGGCCGTGCTCATTCCGGAATCCTATGTCGCCGACCTCAATGTGCGCATGGCGCTTTACCGCCGCCTCGCCGGGGTGGAAGGCCGGGCGGAGATCGATCGTTTCGCCGCCGAACTGATCGACCGTTTCGGCCCCCTGCCGGATGAGGTGAAGCATCTCTTGGAAATCGTCGCGATCAAGCATCTCTGCCGCATCGCGCTGGTGGAAAAGATCGAGGCCGGGCCGAAGGGCGCCACCTTGAGCTTCCGCAACAATCTGTTCCCCAATCCGGTGGCACTTGTGCGCCTGATCAATGCGCATCAGAAAACCATGAAGGTGCGCCCGGATCAGAAGGTGGTCATCACCCGCGACTGGCCCGCGCCGGAACAGCGGCTGAAGGGTGTTCAGGCTTTGCTGACCCAGCTTTCCCAACTGGCGGAAGCGGCCTAG
PROTEIN sequence
Length: 1164
VERLNYIAKADGRFALTGAPEGYDAYLAAEAARRGKQVVLFIAADGVHAAAIEEALRFFDAGLQVLPFPAWDCLPYDRVSPKSDLEGRRLATLAALARRTKDSAPAVVVATVNAVLQRVPPKDAIAQASFFAHAGKDVDRDALIVFLARNGYTRASTVREPGDYALRGGIVDLWPPGEEAPLRLDFFGSGLETIRRFDAETQLSRDTVSGIELLPASEAPLDRQSISLFREGYVATFGPAGHDDPLYESVSAGRKHQGMEHWLPLFYSHLDTLFDYAPRALVFLSHQAVEAKDARLSLITDYYETREQMRRSAYDSKNPIKGAPYKPLPPDRLYLSGAEWDERLAKHPLRQLSPFHAPESKKSLDAGGKAGRDFAPERAQGRVNVFEAAAKHVKALQAAGTRVVLTAWTEGSAERLGGVLADHGLGPARAVSGWADVQTLHKGAVGIAVLGLEHGFETPDFAIVAEQDILGDRMVRARTKTRKAQNFLQEASSLAPGDLVTHIEHGIGRYLGLKTLDVAGAPHDCLALQYDGGKLFLPVENIELLTRYGADEGTAQLDRLGGAGWQQRKARMKERVREIAAELIAIAAARELKTLPAIEAPQGLYDEFCARFPYQETEDQEKAIADVVSDLAHGRPMDRLVCGDVGFGKTEVALRAAFVVAMSGEQVAVVAPTTLLARQHARNFAERFQGFPIKVRQLSRFVDAKEARETKAGLASGDVNIVVGTHALLAKSISFSNLGLVIVDEEQHFGVTHKERLKSLKADVHVLTLTATPIPRTLQLALSGVRDLSLITTPPIDRLAVRTFITPFDPLVLREALLREHYRGGQSFYVCPRIADLRDAEQFLKDTVPEVKAAVAHGQMSATHLEEVMTAFYERQVDVLISTNIVESGLDIPTANTLLVHRADMFGLAQLYQLRGRIGRAKQRAYAYLTTPAERKLTEAAERRLQVLQSLDQLGAGFSVASHDLDIRGAGNLLGEEQSGHVREVGIELYQEMLEEAVSQMRAGGTGDDLPDEWSPQINIGAAVLIPESYVADLNVRMALYRRLAGVEGRAEIDRFAAELIDRFGPLPDEVKHLLEIVAIKHLCRIALVEKIEAGPKGATLSFRNNLFPNPVALVRLINAHQKTMKVRPDQKVVITRDWPAPEQRLKGVQALLTQLSQLAEAA*