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SCN18_30_10_14_R3_B_scaffold_531_24

Organism: SCN18_30_10_14_R3_B_SCNPILOT_EXPT_500_BF_STEP10_Armatimonadetes_55_34_56_13

near complete RP 45 / 55 MC: 2 BSCG 47 / 51 ASCG 13 / 38
Location: comp(22019..23185)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Chthonomonas calidirosea T49 RepID=S0EYQ6_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 51.9
  • Coverage: 368.0
  • Bit_score: 339
  • Evalue 3.40e-90
RNA polymerase sigma factor RpoD similarity KEGG
DB: KEGG
  • Identity: 74.4
  • Coverage: 360.0
  • Bit_score: 483
  • Evalue 5.40e-134
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 74.4
  • Coverage: 360.0
  • Bit_score: 483
  • Evalue 2.70e-133

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Taxonomy

SCNPILOT_EXPT_500_BF_STEP10_Armatimonadetes_55_34 → SCNPILOT_EXPT_500_BF_STEP10_Armatimonadetes_55_34 → SCNPILOT_EXPT_500_BF_STEP10_Armatimonadetes_55_34 → SCNPILOT_EXPT_500_BF_STEP10_Armatimonadetes_55_34 → SCNPILOT_EXPT_500_BF_STEP10_Armatimonadetes_55_34 → Bacteria

Sequences

DNA sequence
Length: 1167
ATGCCAGTAGAAAATGGGTTAGCAACACCGCCGCGAAGAGGCCGCGCGATCACCGTTCGCACTCCCGGCCGACATTCCTTTGCGGAAGCCAGCGCCAACCCGCTCCTGGAGGATCCGCAAGCGGAACCCGCTGAAGACGATCTTCTTGCTCTTGCCGATGCAGAGGAGGAGACCGAGGAAGGCGAAGAGGAATCCCGTACCCATGATGACTCGGAAGAGCTCGAAATGTGGATGCGGCAAACCCGCCGCGCTTCGCTGCTGACGCCAGAACAGGAAGTGCACCTTGCGGTGCGCGTTATGGCGAAGGAACTGGCCGACAAGGGCAAAAATGCTGAGTTGCTCCGCCTTCTGCAAAGAAGTGAGCTTGCTCACATGGGCCGCCCTAAAGAACTTACCACGATGGTTCTCCGACGCATCGAGTCGGAGGGTATGGAAGCAAAGCGACACCTGATCGAATCTAACCTACGATTGGTTGTCAGCATTGCTAAGAAGTACAACGCGAGAGGTATCCCGCTTGCCGATCTGATTCAAGAAGGCAACCTGGGTCTTATTCGCGCCGTCGAGAAGTTCGACTGGTCGAAAGGTTTCCGATTCAGCACCTATGCGACTTGGTGGATTCGCCGAGCGATTGCTCGTGCGATCATCAATCAGGGTCGAACGATTCGTATCCCCGTTTATGTCGCGGAACTCATCAACAAGGTCGTCAAGACCGCTTCCCGCTTGCAGCAAGAGCTTCAGCGAGAGGCAACCGAAGAAGAGATCTCCCGAGAGGTTGGCCTCTCCGTCGACCGCGTTCGTGAAATGATGCGCGTGGCGGTTGAGCCGATTTCCTTGGAGACGCCGGTTGGCGAAAAGGACAACTCGAGCATTGGCGACTTCGTGCAGAGCACGAACATGCCGACGCCGGGCGACGTCACTTGGACGCTTATTCGACGCGAGGAGATCGACGGCATTCTCGGTCGTTTGACGAGCCGAGAGCGAGACGTCGTTCGACTTCGATTCGGGCTGGATGACGGTCGGTCTCGAACCTTGGAAGAGGTCGGTAGCGAGCTTAACGTTACTCGCGAGCGCGTTCGTCAGATCGAGCTTCGAGCGATGAAGAAGCTTCGCCATATCGGGCAAGAGCTCTCTTCCCAGGGCTTCACCATTACGCCTACTCCGAGCTAA
PROTEIN sequence
Length: 389
MPVENGLATPPRRGRAITVRTPGRHSFAEASANPLLEDPQAEPAEDDLLALADAEEETEEGEEESRTHDDSEELEMWMRQTRRASLLTPEQEVHLAVRVMAKELADKGKNAELLRLLQRSELAHMGRPKELTTMVLRRIESEGMEAKRHLIESNLRLVVSIAKKYNARGIPLADLIQEGNLGLIRAVEKFDWSKGFRFSTYATWWIRRAIARAIINQGRTIRIPVYVAELINKVVKTASRLQQELQREATEEEISREVGLSVDRVREMMRVAVEPISLETPVGEKDNSSIGDFVQSTNMPTPGDVTWTLIRREEIDGILGRLTSRERDVVRLRFGLDDGRSRTLEEVGSELNVTRERVRQIELRAMKKLRHIGQELSSQGFTITPTPS*