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SCN18_26_2_15_R1_B_scaffold_1018_2

Organism: SCN18_26_2_15_R1_B_SCNPILOT_CONT_1000_BF_Rhizobiales_65_79_66_12

near complete RP 49 / 55 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: comp(1234..2616)

Top 3 Functional Annotations

Value Algorithm Source
Type I secretion outer membrane protein, TolC family n=1 Tax=Agrobacterium tumefaciens 5A RepID=H0HH74_RHIRD similarity UNIREF
DB: UNIREF100
  • Identity: 46.0
  • Coverage: 415.0
  • Bit_score: 359
  • Evalue 3.80e-96
Type I secretion outer membrane protein, TolC family {ECO:0000313|EMBL:EHJ95357.1}; TaxID=1107544 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens 5A.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 46.0
  • Coverage: 415.0
  • Bit_score: 359
  • Evalue 5.30e-96
type I secretion protein TolC similarity KEGG
DB: KEGG
  • Identity: 46.1
  • Coverage: 414.0
  • Bit_score: 357
  • Evalue 4.10e-96

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Taxonomy

SCNPILOT_EXPT_300_BF_Sphingomonas_67_13 → Sphingomonas → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1383
ATGCGCAGAAACTCGATTGCGATTCCGTTTATCCTTCTGGAGGGGCTGTTCATACACGGCTGTGCCTCCGCCAAGCTCGACCGCGCGAAGACGGATTCAATATCGCCACGTTCAAATTTACAATCTGAGATTGTTAAACCGGCCCCGGCAGGCGACGTCTTGCCGGCCTCGCCTAAGGGGAACGGCGTCCTCTCCATGACCGCGGCCGCGCAGCTGGCGGTGTCGAGGCATCCGGCGGTCGCGGAAGCCATCGGCCGCGTCCGCCAGCAAGACCAGATGATCGCCGAAGCCCGTTCAGGCTATCTGCCAAGGGTCAGCGGCGGCCCGCGAGCCGGCTTCGACAACAGGCTGGAAGGCCAATGGCGCCCCGTCTTCAATCTGTCGGCGTCGCAGATGGTCTACGATTTCGGCGCGGTCGCGAGCCGCATCGACGCCGAGACCGCCGAGAGAACGGCACGCCATGCTCAAATGATCGGCACGCTCGACGATCTCGTCCGCAAGACGGCCGACGCGGTCATCGAAGTCGACCGCTACAATCGTCTGGCGGCGGTGAGCAGGGAGCATATTCAGGACAATCAGCGAATATTGAAGCTCGTCACCTCGCGCGCAGACCGGGGCGCGAGCACGAAATCGGACCGTCTACAGGCCGAGGCGCGTGTCCAGGAGGCACAGTCGACCTTGCTCGAGGTCCAGTCCCAGGCAGGTCGATGGCAGGCCACGCTGGCCGCGCTGACCGGCATGGCGGCGCCGATAGTGGTCGATGCCAGCGTCCCCGCGCCGCTTCAGGATGCCTGCTCCAGGGGCCCGCCCGACTGGTCGAAGGTAAGCAGCGTCATGAAGGCTGAGGCCGACATCAGAAGCGCAAACGCGCGATTGCGGCTCAGCCGGGCTGAAATGTTCCCAACTCTGTCTCTCGCAGGGGGTGTGGACGTGGATATACGGAACCCGACACGGGAATCGGATTACAGCATCGGGTTGCAGGCCTCGGCGAGCCTCTATGACGGTGGCAGCCTGTCGGCGCGCCGCAATGCGGCCAGCCTGGCCGCCGCTACCGCCCAGGCGGCGAAAGCGAACGCGATGCTTGAATCGAGCCGCAGCCTTGCAGAAGCGGCGAACCAGCTTGCCGGACTCGAGCAGCAGCTGAAGTTGCTGGGCGGCCGAGAGCAGACGATGAAAGCGACGAGAGATCTCTACGAAGTCCAATACAGGGATCTCGGGACCCGGACGCTTCTCGATCTTCTGGACGCCGCCGACGAATTTCACGGTGCCCGCTTCCAGAACGTCAATGTCGAACACGACATCGCCGATCTGAAAGTGGAATGCACTTTCTTCTCAGGCAATCAACGTCAGGCATTTGCGATCGGTGAGCCCGATTTTCGATGA
PROTEIN sequence
Length: 461
MRRNSIAIPFILLEGLFIHGCASAKLDRAKTDSISPRSNLQSEIVKPAPAGDVLPASPKGNGVLSMTAAAQLAVSRHPAVAEAIGRVRQQDQMIAEARSGYLPRVSGGPRAGFDNRLEGQWRPVFNLSASQMVYDFGAVASRIDAETAERTARHAQMIGTLDDLVRKTADAVIEVDRYNRLAAVSREHIQDNQRILKLVTSRADRGASTKSDRLQAEARVQEAQSTLLEVQSQAGRWQATLAALTGMAAPIVVDASVPAPLQDACSRGPPDWSKVSSVMKAEADIRSANARLRLSRAEMFPTLSLAGGVDVDIRNPTRESDYSIGLQASASLYDGGSLSARRNAASLAAATAQAAKANAMLESSRSLAEAANQLAGLEQQLKLLGGREQTMKATRDLYEVQYRDLGTRTLLDLLDAADEFHGARFQNVNVEHDIADLKVECTFFSGNQRQAFAIGEPDFR*