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SCN18_30_10_14_R2_B_scaffold_181_11

Organism: CN18_30_10_14_R2_B_Alphaproteobacteria_67_12

near complete RP 50 / 55 MC: 1 BSCG 50 / 51 MC: 1 ASCG 10 / 38
Location: comp(10454..10738)

Top 3 Functional Annotations

Value Algorithm Source
RNA-binding protein Hfq n=1 Tax=Acidiphilium sp. PM RepID=F7S7U8_9PROT similarity UNIREF
DB: UNIREF100
  • Identity: 96.4
  • Coverage: 83.0
  • Bit_score: 165
  • Evalue 1.60e-38
RNA-binding protein Hfq {ECO:0000256|HAMAP-Rule:MF_00436, ECO:0000256|SAAS:SAAS00067493}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 96.4
  • Coverage: 83.0
  • Bit_score: 165
  • Evalue 2.30e-38
RNA chaperone Hfq similarity KEGG
DB: KEGG
  • Identity: 95.2
  • Coverage: 83.0
  • Bit_score: 164
  • Evalue 1.40e-38

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Taxonomy

SCNPILOT_CONT_750_BF_Rhodospirillales_68_10 → SCNPILOT_CONT_750_BF_Rhodospirillales_68_10 → SCNPILOT_CONT_750_BF_Rhodospirillales_68_10 → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 285
GTGGCCAACGAGAAATCGCAGAACGTTCAGGACGTCTTCCTGAACCATGTGCGGAAGAACAAGACCCCCGTGACCGTGTTTCTGGTCAACGGTGTCAAGCTGCAGGGCATCATCACGTGGTTCGACAATTTCTCCGTCTTGCTCCGTCGGGATGGACACACCCAGCTCGTGTACAAGCACGCCATCAGCACCGTGATGCCGGGCGCGCCGATCCAGCTGTTCGACGCCACCAAGGCCGAGGGCAGCGCGGCAGTGCGCGAGCCGGCCACCGCCGCCGTTGAGTGA
PROTEIN sequence
Length: 95
VANEKSQNVQDVFLNHVRKNKTPVTVFLVNGVKLQGIITWFDNFSVLLRRDGHTQLVYKHAISTVMPGAPIQLFDATKAEGSAAVREPATAAVE*