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SCN18_25_8_15_R2_B_scaffold_3412_3

Organism: SCN18_25_8_15_R2_B_SCNPILOT_EXPT_1000_BF_Devosia_62_26-related_62_9

near complete RP 49 / 55 BSCG 49 / 51 ASCG 13 / 38
Location: comp(890..1429)

Top 3 Functional Annotations

Value Algorithm Source
RNA 2',3'-cyclic phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_01940}; Short=RNA 2',3'-CPDase {ECO:0000256|HAMAP-Rule:MF_01940};; EC=3.1.4.- {ECO:0000256|HAMAP-Rule:MF_01940};; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 94.4
  • Coverage: 179.0
  • Bit_score: 342
  • Evalue 2.00e-91
2'-5' RNA ligase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6Y7_PELHB similarity UNIREF
DB: UNIREF100
  • Identity: 67.6
  • Coverage: 179.0
  • Bit_score: 256
  • Evalue 1.30e-65
2'-5' RNA ligase similarity KEGG
DB: KEGG
  • Identity: 67.6
  • Coverage: 179.0
  • Bit_score: 256
  • Evalue 3.80e-66

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Taxonomy

SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14 → Mesorhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 540
ATGCCCCGGCTTTTTACCGGCCTCGAAATTCCCTCCGATATCGGCTTTGCCCTGTCGCTGAAACGCGGCGGCCTCAATGGCGCGCGCTGGATCGAACCGGAAAATTATCACATTACCTTGAGGTTCATCGGCGACGTCGACAATCAGACCGCCAATGAGGTGGTCGACAATCTCGATCATCTCAGCGATAGCCTCAGCTTTCCTATCCGCCTGACGCATCTGGGAACTTTCGGCGGCGACAAGCCCCGAGCGCTCTATGTCGGGGTCGAGCCCAGTGAGGCGCTGACCCGGCTGCAGGCCGCCCATGAGCGCATGCTGCAGCGCGCCGGCCTTCCGCCCGATGGCCGCAAGTTCGTGCCCCATGTGAGCCTAGCGCGCCTGCGTGGCACCTCGGCCGAAGACGTCGCCCGCTTCATCGCCGAGGCTGGCCGTTTCGAGCCGCTGAGCTTTTCCGTGCCGCGCTTTGCGCTGTTTTCGAGCCGCGAATCGGTGGGCGGCGGCCCCTATGTGGTGGAAGAAACCTATCCCCTGGCCGCTTGA
PROTEIN sequence
Length: 180
MPRLFTGLEIPSDIGFALSLKRGGLNGARWIEPENYHITLRFIGDVDNQTANEVVDNLDHLSDSLSFPIRLTHLGTFGGDKPRALYVGVEPSEALTRLQAAHERMLQRAGLPPDGRKFVPHVSLARLRGTSAEDVARFIAEAGRFEPLSFSVPRFALFSSRESVGGGPYVVEETYPLAA*