ggKbase home page

SCN18_25_8_15_R2_B_scaffold_2141_5

Organism: SCN18_25_8_15_R2_B_SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10_40_9

near complete RP 52 / 55 MC: 1 BSCG 50 / 51 MC: 2 ASCG 13 / 38
Location: 2345..3277

Top 3 Functional Annotations

Value Algorithm Source
Helix-turn-helix, AraC domain-containing protein n=1 Tax=Emticicia oligotrophica (strain DSM 17448 / GPTSA100-15) RepID=I2EQZ6_EMTOG similarity UNIREF
DB: UNIREF100
  • Identity: 50.4
  • Coverage: 270.0
  • Bit_score: 298
  • Evalue 7.00e-78
Helix-turn-helix, AraC domain-containing protein similarity KEGG
DB: KEGG
  • Identity: 50.4
  • Coverage: 270.0
  • Bit_score: 298
  • Evalue 2.00e-78
Helix-turn-helix, AraC domain-containing protein {ECO:0000313|EMBL:AFK02099.1}; TaxID=929562 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Emticicia.;" source="Emticicia oligotrophica (strain DSM 17448 / GPTSA100-15).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 50.4
  • Coverage: 270.0
  • Bit_score: 298
  • Evalue 9.80e-78

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10 → SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10 → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 933
TTGGGCTTCGGTACCGGGCTGACGGAACACAGAATACCAGCACAGCAGCAAGCCTATTCATTGTATGCCACTACGGACAACCCTAACAATGCAAGGACAATGGTACTTTTTGAATTTTCGCCGAGCCAGTTTTTGACGGACTATGTTCGGACGTATCGGCTTGTGCATTTTCAATTTACCAATTCTCAACAGTCATTCTGCAAACCCTACCCGCCAAAACCTGAACATTGCCTGACTTTTTATCCAAGAGATTGTGAAAACGTTGAATACGCAGAAAGCGGCAAAAAAGCAGGTGACCTAAAAGCCGTTTTGTTTGGACAGCAAACAGAAGTTTCCAACCGCTATGTAGGAAAAGATTTTCTCCTTTTTCAGATAGTATTTAAGCCGGGGGCTTTGTACCGCATTACAGGAGTTCCGTCTTACGAAATAACCAATAGTTATTTAGACGCAGAGCTTTTTTTCAATAAAGAAGTCAAAGAAGTAAATGACCGCTTAAATGATTCCCCTAATTACAACGAAATGGTGTCGGTTATAGAAATGTTTCTTTTGAGACAAATCAAAATGAAATCGTATGACTTTCACCGAATGGATATGATAAATGAAATGATTATTAAAAATTCTGACAACCGGACAGTTGACTGGCTTGCTAAAGAATCCTGCCTATCCATACGACAATTTGAAAGAGTGTTTGCTGAAAGAATGGGAGTTTCGCCAAAATACTATACAAAAGTGGCAAGATTTGAAAACGCTTTCCGAATGAAAAACAAATATCCTCATTTAGATTGGTTGACGATTGCCTTGCATTGCGGCTATTACGATTATCAGCACTTGGTTAAAGATTATAAGAACCTGACGCAGAAAACACCAACCGAGTTTCATCATTTAGACCTTTCATCGCCTGAAAGGGTATTTGGCGACAAGGACACTTATTAA
PROTEIN sequence
Length: 311
LGFGTGLTEHRIPAQQQAYSLYATTDNPNNARTMVLFEFSPSQFLTDYVRTYRLVHFQFTNSQQSFCKPYPPKPEHCLTFYPRDCENVEYAESGKKAGDLKAVLFGQQTEVSNRYVGKDFLLFQIVFKPGALYRITGVPSYEITNSYLDAELFFNKEVKEVNDRLNDSPNYNEMVSVIEMFLLRQIKMKSYDFHRMDMINEMIIKNSDNRTVDWLAKESCLSIRQFERVFAERMGVSPKYYTKVARFENAFRMKNKYPHLDWLTIALHCGYYDYQHLVKDYKNLTQKTPTEFHHLDLSSPERVFGDKDTY*