ggKbase home page

SCN18_25_8_15_R2_B_scaffold_1596_4

Organism: SCN18_25_8_15_R2_B_SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10_40_9

near complete RP 52 / 55 MC: 1 BSCG 50 / 51 MC: 2 ASCG 13 / 38
Location: comp(5992..6564)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma-70 factor, Bacteroides expansion family 1 n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KXK1_SOLCM similarity UNIREF
DB: UNIREF100
  • Identity: 43.8
  • Coverage: 178.0
  • Bit_score: 164
  • Evalue 5.70e-38
ECF RNA polymerase sigma factor SigK {ECO:0000313|EMBL:KHJ38129.1}; TaxID=1122941 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter glucosidilyticus.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 47.8
  • Coverage: 182.0
  • Bit_score: 167
  • Evalue 1.60e-38
RNA polymerase sigma-70 factor, Bacteroides expansion family 1 similarity KEGG
DB: KEGG
  • Identity: 43.8
  • Coverage: 178.0
  • Bit_score: 164
  • Evalue 1.60e-38

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10 → SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10 → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 573
GTGCACGAAAATTTAAACGATACAGAATTATTACAGTTGTTAAAACAAGGGAGTGAAGAAGCCTTTAGCCAAATTTATACCCGGTATTGGGAGACTATGTACCGAGCGACTTTCAAACGGCTGCAAGACCCTATAAAATCAAAAGATATCGTACAGGATATTTTTATGCAGTTATGGATGAGACGTGGAGAATTGCAGATTCAGAACTTGGCAGCTTATTTAAACATGGCAACCCGTAATCAGGTCCTGAAGATATTTGATAAAGAAGAGCGATTTACTGCGATAGATGAGCTGTTACTCCATTTGGAAAGCCCTTCTATGGTATCTGACGCGGGTATTATCAGGCAGGAACTGCTACAGACCTACCATGCCCTGATAGCTAGACTAACGCCATCGCAGCAAGCTATTTTTAAACTTAGATTTGAAGAAGACCTGTCTACGGTGGAGATTGCCCAAAGAATGGATATCTCTCGCAAAACCGTCCAAAACCAATTAAGTACCTCCCTGGCGCTTCTTCGTTCTATGCTGGTAAGTTTAATCATTTTTTCAACCAGTACAGATATACCCAATTAA
PROTEIN sequence
Length: 191
VHENLNDTELLQLLKQGSEEAFSQIYTRYWETMYRATFKRLQDPIKSKDIVQDIFMQLWMRRGELQIQNLAAYLNMATRNQVLKIFDKEERFTAIDELLLHLESPSMVSDAGIIRQELLQTYHALIARLTPSQQAIFKLRFEEDLSTVEIAQRMDISRKTVQNQLSTSLALLRSMLVSLIIFSTSTDIPN*