ggKbase | organisms

Consensus taxonomy: Microbacterium → Actinomycetales → Actinobacteridae → Actinobacteria → Bacteria

Metagenomic Context

Parent: SCN18_25_8_15_R1_B_UNK

Properties

Avg. coverage: 7.91 Longest contig: 13.54 Kbp Bin length: 2.10 Mbp GC content: 70.43 %

Contigs count: 961 Features count: 2807 rRNAs count: 0 tRNAs count: 20

Genome completeness

near complete RP 43 / 55 MC: 2 BSCG 44 / 51 MC: 4 ASCG 9 / 38 MC: 1

Description

SCN18_25_8_15_R1_B_concoct_032

Displaying items 651-700 of 961 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
SCN18_25_8_15_R1_B_scaffold_10263 Species: Microbacterium ginsengisoli_SCNPILOT_CONT_1000_P_Microbacterium_71_138 (50%)	2	1811 bp	73.27	7.45	94.26
SCN18_25_8_15_R1_B_scaffold_15896 Species: SCNpilot_P_inoc_Microbacterium_67_17 (50%)	2	1293 bp	70.61	9.74	96.75
SCN18_25_8_15_R1_B_scaffold_9408 Species: SCNpilot_P_inoc_Microbacterium_67_17 (50%)	2	1927 bp	71.87	6.38	100.42
SCN18_25_8_15_R1_B_scaffold_8984 Species: CN-SCN_Microbacterium_27x (50%)	2	1996 bp	72.55	7.97	96.79
SCN18_25_8_15_R1_B_scaffold_8217 Species: CN-SCN_Microbacterium_18x (50%)	2	2149 bp	67.15	7.12	98.00
SCN18_25_8_15_R1_B_scaffold_7764 Species: CN-SCN_Microbacterium_200x (50%)	2	2258 bp	72.28	7.04	100.04
SCN18_25_8_15_R1_B_scaffold_9670 Species: SCNpilot_P_inoc_Microbacterium_67_17 (50%)	2	1887 bp	67.09	10.33	95.71
SCN18_25_8_15_R1_B_scaffold_14888 Species: SCNPILOT_SOLID_1_TRIM150_Microbacterium_69_53 (50%)	2	1357 bp	73.32	6.96	100.15
SCN18_25_8_15_R1_B_scaffold_14121 Species: SCNPILOT_EXPT_1000_BF_Microbacterium_69_10 (50%)	2	1413 bp	72.75	9.13	90.02
SCN18_25_8_15_R1_B_scaffold_15392 Species: CN-SCN_Microbacterium_18x (50%)	2	1322 bp	71.71	5.22	81.24
SCN18_25_8_15_R1_B_scaffold_9160 Species: SCNPILOT_SOLID_1_TRIM150_Microbacterium_69_53 (100%)	2	1966 bp	67.80	8.85	93.69
SCN18_25_8_15_R1_B_scaffold_17552 Species: Microbacterium testaceum_SCNpilot_P_inoc_Microbacterium_70_36 (50%)	2	1205 bp	66.64	6.10	97.59
SCN18_25_8_15_R1_B_scaffold_21369 Species: Microbacterium testaceum_SCNpilot_P_inoc_Microbacterium_70_36 (50%)	2	1044 bp	66.00	5.17	79.31
SCN18_25_8_15_R1_B_scaffold_17298 Species: CN-SCN_Microbacterium_37x (50%)	2	1217 bp	70.34	7.76	75.43
SCN18_25_8_15_R1_B_scaffold_12659 Species: SCNPILOT_EXPT_1000_BF_Microbacterium_69_10 (100%)	2	1535 bp	75.70	8.31	100.07
SCN18_25_8_15_R1_B_scaffold_20939 Species: CN-SCN_Microbacterium_27x (50%)	2	1555 bp	67.91	8.78	66.56
SCN18_25_8_15_R1_B_scaffold_12148 Species: SCNPILOT_SOLID_1_TRIM150_Microbacterium_69_53 (100%)	2	1586 bp	73.46	6.05	97.79
SCN18_25_8_15_R1_B_scaffold_10532 Species: CN-SCN_Microbacterium_37x (100%)	2	1775 bp	70.54	8.45	91.10
SCN18_25_8_15_R1_B_scaffold_17301 Species: CN-SCN_Microbacterium_200x (50%)	2	1217 bp	69.76	8.13	96.63
SCN18_25_8_15_R1_B_scaffold_9166 Species: Microbacterium ginsengisoli_SCNPILOT_CONT_1000_P_Microbacterium_71_138 (100%)	2	1965 bp	70.18	7.79	100.15
SCN18_25_8_15_R1_B_scaffold_10278 Species: CN-SCN_Leifsonia_139x (50%)	2	1808 bp	68.92	5.39	96.57
SCN18_25_8_15_R1_B_scaffold_11847 Species: CN-SCN_Microbacterium_18x (50%)	2	1618 bp	66.44	9.09	95.86
SCN18_25_8_15_R1_B_scaffold_12663 Species: CN-SCN_Microbacterium_18x (50%)	2	1535 bp	70.10	5.47	89.12
SCN18_25_8_15_R1_B_scaffold_15914 Species: SCNPILOT_SOLID_1_TRIM150_Microbacterium_69_53 (50%)	2	1292 bp	72.99	6.04	100.08
SCN18_25_8_15_R1_B_scaffold_18707 Species: CN-SCN_Microbacterium_18x (50%)	2	1149 bp	67.28	7.05	98.17
SCN18_25_8_15_R1_B_scaffold_8491 Species: Microbacterium testaceum_SCNpilot_P_inoc_Microbacterium_70_36 (50%)	2	2089 bp	72.95	7.04	99.38
SCN18_25_8_15_R1_B_scaffold_16222 Species: Microbacterium testaceum_SCNpilot_P_inoc_Microbacterium_70_36 (50%)	2	1274 bp	69.78	8.12	100.31
SCN18_25_8_15_R1_B_scaffold_20182 Species: CN-SCN_Microbacterium_200x (50%)	2	1087 bp	71.02	7.73	96.60
SCN18_25_8_15_R1_B_scaffold_9432 Species: CN-SCN_Microbacterium_18x (100%)	2	1923 bp	74.93	7.64	100.16
SCN18_25_8_15_R1_B_scaffold_11856 Species: CN-SCN_Microbacterium_27x (100%)	2	1617 bp	69.76	8.44	82.93
SCN18_25_8_15_R1_B_scaffold_6163 Species: SCNpilot_P_inoc_Microbacterium_67_17 (50%)	2	2735 bp	72.25	7.02	96.20
SCN18_25_8_15_R1_B_scaffold_8241 Species: Microbacterium testaceum_SCNpilot_P_inoc_Microbacterium_70_36 (100%)	2	2144 bp	69.22	7.77	98.23
SCN18_25_8_15_R1_B_scaffold_8497 Species: Microbacterium ginsengisoli_SCNPILOT_CONT_1000_P_Microbacterium_71_138 (50%)	2	2087 bp	70.10	8.70	97.32
SCN18_25_8_15_R1_B_scaffold_15153 Species: SCNPILOT_SOLID_1_TRIM150_Microbacterium_69_53 (50%)	2	1338 bp	73.09	7.96	99.10
SCN18_25_8_15_R1_B_scaffold_10034 Species: SCNPILOT_EXPT_1000_BF_Microbacterium_69_10 (50%)	2	1840 bp	72.28	7.99	97.99
SCN18_25_8_15_R1_B_scaffold_9948 Species: CN-SCN_Microbacterium_18x (50%)	2	1850 bp	68.65	7.86	99.73
SCN18_25_8_15_R1_B_scaffold_10804 Species: SCNPILOT_SOLID_1_TRIM150_Microbacterium_69_53 (50%)	2	1737 bp	66.67	5.27	100.00
SCN18_25_8_15_R1_B_scaffold_9693 Species: Microbacterium testaceum_SCNpilot_P_inoc_Microbacterium_70_36 (50%)	2	1885 bp	67.32	7.88	91.03
SCN18_25_8_15_R1_B_scaffold_12166 Species: SCNpilot_P_inoc_Microbacterium_67_17 (50%)	2	1584 bp	69.57	7.20	94.70
SCN18_25_8_15_R1_B_scaffold_20190 Species: Microbacterium testaceum_SCNpilot_P_inoc_Microbacterium_70_36 (100%)	2	1087 bp	71.11	4.83	85.56
SCN18_25_8_15_R1_B_scaffold_10038 Species: BJP_08E140C01_Actinomycetales_70_11 (50%)	2	1839 bp	68.35	7.42	100.16
SCN18_25_8_15_R1_B_scaffold_16743 Species: Microbacterium testaceum_SCNpilot_P_inoc_Microbacterium_70_36 (50%)	2	1245 bp	69.00	6.63	100.00
SCN18_25_8_15_R1_B_scaffold_10039 Species: SCNpilot_P_inoc_Microbacterium_67_17 (50%)	2	1839 bp	72.27	8.65	84.34
SCN18_25_8_15_R1_B_scaffold_19768 Species: Microbacterium testaceum_SCNpilot_P_inoc_Microbacterium_70_36 (50%)	2	1104 bp	72.55	8.97	100.00
SCN18_25_8_15_R1_B_scaffold_12680 Species: CN-SCN_Microbacterium_27x (50%)	2	1534 bp	70.01	10.27	83.90
SCN18_25_8_15_R1_B_scaffold_17832 Species: SCNpilot_P_inoc_Microbacterium_67_17 (50%)	2	1190 bp	71.01	7.69	92.27
SCN18_25_8_15_R1_B_scaffold_16490 Species: CN-SCN_Microbacterium_18x (50%)	2	1258 bp	74.17	7.03	92.77
SCN18_25_8_15_R1_B_scaffold_12940 Species: Microbacterium ginsengisoli_SCNPILOT_CONT_1000_P_Microbacterium_71_138 (100%)	2	1511 bp	68.50	8.14	71.08
SCN18_25_8_15_R1_B_scaffold_22454 Species: CN-SCN_Microbacterium_200x (50%)	2	1006 bp	71.17	6.56	95.13
SCN18_25_8_15_R1_B_scaffold_21908 Species: Microbacterium ginsengisoli_SCNPILOT_CONT_1000_P_Microbacterium_71_138 (50%)	2	1024 bp	66.80	3.66	87.89

Displaying items 651-700 of 961 in total

SCN18_25_8_15_R1_B_Microbacterium_70_8

Description

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

SCN18_25_8_15_R1_B_Microbacterium_70_8

Description

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Merge with other organism

Processing

Terms of Service

Search Help