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SCN18_14_9_16_R4_B_scaffold_2756_9

Organism: SCN18_14_9_16_R4_B_SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9_67_9

near complete RP 44 / 55 MC: 1 BSCG 47 / 51 MC: 1 ASCG 9 / 38 MC: 2
Location: 5472..6533

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 94.1
  • Coverage: 355.0
  • Bit_score: 649
  • Evalue 1.50e-183
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6) similarity KEGG
DB: KEGG
  • Identity: 93.5
  • Coverage: 355.0
  • Bit_score: 647
  • Evalue 1.50e-183
DNA-directed RNA polymerase subunit alpha n=1 Tax=Sphingomonas melonis RepID=UPI0003812FDB similarity UNIREF
DB: UNIREF100
  • Identity: 94.4
  • Coverage: 355.0
  • Bit_score: 650
  • Evalue 8.20e-184

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Taxonomy

SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9 → Sphingomonas → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1062
TTGTCCGTTAACGCAAAGAACTGGCAGGAACTGAAGAAGCCCAACGCCCTCGAGAAGAAGGGTGGCGACGGGAAGCGCAAGGCGACGTTTGTTGCCGAGCCGCTGGAGCGCGGTTTCGGCCTGACGCTCGGCAATGCGCTGCGCCGCGTGCTGCTCTCCTCGCTGCAGGGCGCGGCCGTCACCTCGATCAAGATCGAGAACGTGCTGCACGAGTTCAGCTCGCTCGCCGGTGTTCGTGAAGACGTCACCGACATCGTGCTGAACGTCAAGCAGATCGCGCTGAAGATGCAGGGCGAAGGGCCGAAGCGGCTCCAGCTGTCCGCCACCGGTCCGGCCGAAGTGAAGGCCGGCGACATCGCCGTCAGCGGCGATATCGAGGTGATGAACCCCGAGCTGGTGATCTGCCACCTCGACGAAGGCGCGACGCTCAACATGGAGCTGACCGCAGACGTCGGTAAGGGCTATGTCCCGGCCGTCGCCAATCGTCCGGCGGATGCGCCGATCGGGTTGATCCCGGTCGACGCGCTGTATTCGCCGGTGCGCCAGGTGAGCTACAAGGTCGATCCGACCCGCGTTGGCCAGGATCTCGATTACGACAAGCTCACGCTGTCGATCGAGACCGACGGCACCGTGACGCCGGAAGATGGCCTGGCCTATGTCGCGCGCATCCTTCAGGACCAGCTCGCTCTGTTCGTCCACTTCGACGATTCGGCGATCGCTCGTTCGGCGCCGATCGGCGTCGCTGCGCCGGCCGCCGGTGCAGAAGCGCAGGGCGACACGCAGCAGATCAACCGTTATCTGCTCAAGAAGGTCGATGAGCTGGAACTGTCGGTCCGTTCGGCGAACTGCCTGAAGAACGACAACAACAGCTATAGCGGGGATCTCGTCGGCAAGACCGAGGCGGAAAGGCTCCGCACCCCGAACTTCGGCCGCAAGTCCTTGAACGAGATCAAGGAAGTGCTGTCGTCGATGGGGCTGCGCCTGGGCATGGAAATCCCCGGCTGGCCGCCCGAGAACATCGAGGAAATGGCCAAGAAGCTCGAGCAGGAGATCATGGGCTAA
PROTEIN sequence
Length: 354
LSVNAKNWQELKKPNALEKKGGDGKRKATFVAEPLERGFGLTLGNALRRVLLSSLQGAAVTSIKIENVLHEFSSLAGVREDVTDIVLNVKQIALKMQGEGPKRLQLSATGPAEVKAGDIAVSGDIEVMNPELVICHLDEGATLNMELTADVGKGYVPAVANRPADAPIGLIPVDALYSPVRQVSYKVDPTRVGQDLDYDKLTLSIETDGTVTPEDGLAYVARILQDQLALFVHFDDSAIARSAPIGVAAPAAGAEAQGDTQQINRYLLKKVDELELSVRSANCLKNDNNSYSGDLVGKTEAERLRTPNFGRKSLNEIKEVLSSMGLRLGMEIPGWPPENIEEMAKKLEQEIMG*