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SCN18_14_9_16_R4_B_scaffold_1874_1

Organism: SCN18_14_9_16_R4_B_SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9_67_9

near complete RP 44 / 55 MC: 1 BSCG 47 / 51 MC: 1 ASCG 9 / 38 MC: 2
Location: 3..3149

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 84.5
  • Coverage: 1051.0
  • Bit_score: 1788
  • Evalue 0.0
Transcription-repair-coupling factor n=1 Tax=Sphingomonas sp. S17 RepID=F3WVK5_9SPHN similarity UNIREF
DB: UNIREF100
  • Identity: 84.6
  • Coverage: 1051.0
  • Bit_score: 1788
  • Evalue 0.0
transcription-repair coupling factor similarity KEGG
DB: KEGG
  • Identity: 83.3
  • Coverage: 1051.0
  • Bit_score: 1759
  • Evalue 0.0

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Taxonomy

CN-SCN_Sphingomonas_18x → Sphingomonas → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 3147
CAGCTCGTCCTCACCACCGCCAATGCAGCGACCCAGCGCACGCTGACCCCGTTCCGCATCCGCCAGCTCGTCGCCAATCTGAAGCCGGGCGAGCGGATCAGCCGCGAACGGCTCGCCGCGCTGCTACAGGCCAATGGCTATGTCCGCACCGATACGGTGCATGACGCGGGCGAATATGCGATTCGCGGCGGGATCGTCGATCTGTTCCCGAGCGGCGAGGAACAGGCGCTGCGGCTCGATTTCTTCGGCGACGAGATCGAAAGCGTCCGCACCTTCGACCCCGCCGATCAACGCACCACCGGGCGGATCGACGGCTTCACCTTGCTCCCCGCCTCCGAAGCCTTGCTCGACGAAGACAGCATCAAGCGCTTCCGCACCCGCTATCGCGAAACCTTCGGCGCGACCGCGACCGGCGATCCGCTCTATCAGGCGGTGAGCGACGGCCGGCGACTCGCCGGGATGGAACATTGGCTGCCGCTGTTCGAGGAGAAGCTGGCGAGCATCTTCGATCATCTCGGCGAGGATGTGCTGGTGATCCGCGACAGCGGGGTTACCGCCGCCGCCGAGGCGCGGCTCGAGGCGATCGCGGATTATTACGAGAACCGTAAGCGCGCCGAGGCCGCCCAGCCCGGCAGCTATCGCGCGCTGACCGCCAGGACGCTCTATCGCGACGATGCCGAATGGCGCGCGGGGCTCGACGCGGCGACCGCGCATCTCACCACCTCCTTTCACGAGCCCGAATCCGCCAGCGTGGTCGATTTCGGGGTCGACGGCGCGCGCGATTTCGCCCCCGATCGCGCTGCCGGCACCAATGTCTACGAGGCGGTGGTCGCGCACCTCGCCAAATTGCGCAAGGACGGGCGCACCCCGGTGCTGGCGAGCTATTCGATCGGCGCGCGCGACCGGCTCGGCAATCTGCTCAAGGATCACGGGCTCAACGGCGCCAAGCCGGTCGAAACGTGGCAGGAGGCCTTGGGGGTCGGCGAGACGCAGGTCGCGCTGGTCGTCCTGCCGCTCGATCACGGCTTCACCGCGCCGCGCGTCGGGTTGCTCACCGAGCAGGACATGCTCGGCGATCGCCTCGTCCGCCGCCAGAAGCGCCGCAAATCGGCCGACGCCTTTCTCGCCGAGCTGGCGACGCTCTCGCCCGGCGATCTCGTCGTCCATGTCGATCACGGCATCGGCCGCTATGAGGGGCTGACCTCGATTCCCGTGGGCAAGGCGCCGCACGATTGCGTCGCGCTGACCTACGCCGGCGGCGACAAGCTCTACGTCCCGGTCGAGAATCTCGAAGTCCTGTCGCGCTACGGCTCCAGCGAGGAAGGCGCCGCGCTCGACCGGCTCGGCGGCGAGGCGTGGCAGCGCCGCAAGGCGCGGATGAAGGAGCGCATCCGCGAGATCGCGGGTGAATTGATCGCCGTCGCCGCCGAACGCGCGCTGCGCACCGGCGAGGTGGCCGAGCCCGACAGCAACGGCTTCCCGACCTTCGTCGATCGCTTCCCCTATGAGGAAACCGACGATCAGGATCGCGCGATCGAGGATGTGCTGGCCGATCTGTCCGCCGGCAAGCCGATGGACCGGCTGATCGTCGGCGATGTCGGCTTCGGCAAGACCGAGGTGGCGCTGCGCGCGGCCTTCGTCGCGGCGATGGCCGGGATGCAGGTCGCATTGGTCTGCCCCACCACCCTGCTCGCGCGCCAGCATTACCAGAATTTCGTCGCGCGCTTCGAAGGCTTCCCGATCAACATCGGCCGCCTGTCGCGCCTCGTCTCGGCCAATGAGTCGAAGGCGACGCGCGAACGGCTCGCCTCGGGCGATCTCGACATCATCATCGGCACCCACGCGGTGCTGGCCAAGAGCGTCGAGTTCAAGCGGCTCGGGCTCGTCATCGTCGACGAGGAACAGCGCTTCGGCGTCACCCACAAAGAGCGGCTGAAGGCGCTCAAGAGCGACGTCCACGTCCTCACCCTCACCGCCACCCCGATCCCGCGCACGCTGCAGATGGCGATGTCGGGGCTGCGCGAATTGTCGGTGATCCAGACCCCGCCGGTCGATCGCCTCGCGGTGCGCACCTATGTCATGCCGTGGGATCCGGTGGTGCTGCGCGAGGCCTTGCTGCGCGAACATTATCGCGGCGGGCAAAGCTTCCTCGTCACCCCGCGGATCGCCGATCTCCCCGATATCGAGGAATATCTGCGCAACGAGGTGCCCGAGATCCGCTACGTCATCGCCCACGGCCAGATGGCGGCGGGCGAGGTCGAGGAACGCATGTCGGCCTTTTACGACAAGAAGTTCGAGGTGCTCGTCTCCACCACGATCATCGAGAGCGGGATCGACATCCCCTCGGCCAATACGATGATCGTCAACCGCGCCGACCGTTTCGGCCTCGCCCAGCTCTACCAGCTGCGCGGCCGCGTCGGGCGCTCCAAGACGCGCGCTTACGCCTATCTCGTCACCCCGCCCGAACGGCAGATGACCGATGCGGCCGAAAAACGCCTCAAGGTGCTGTCCGATCTCGATTCGCTCGGCGCGGGCTTCCAGCTCGCCAGCCACGATCTCGATATCCGCGGCGCGGGCAATCTGCTCGGCGACGAACAATCGGGGCATATCAAGGAAGTCGGCTACGAACTTTATCAGTCGATGCTCGAGGAGGCGATCCTCGACGCCAAGGCCGGCGGCCTCGCCGAGCGGAAGCGCGATTTCTCGCCGCAGATCACCGTCGACGCGCCGATCCTGATCCCGGAGGACTATGTCCCCGATCTCGATCTGCGCATGGGGCTCTATCGTCGCCTCAACGAGCTCGACGACAAGCAATCGCTGGAGGCATTCGCCGCCGAGATGATCGACCGCTTCGGTGCGCTTCCCGAGCCGACCGAAAATCTCATCCGCGTGATCGAGATCAAGATGAACGCCAAAAAGGCGTGCGTCGCGAAGATGGATATCGGGCCGAAGGGCGCGCTGGTCACCTTCCACGACGATCGCCCGCCCAATATCGAAGGGCTGCTCGCTTATGTTCAGCGGCTGGGCGCGATCGCCAAGCTCAGGCCGGATTCGAAATTCGCGCTGACCCGCTCATGGCCCGACGCCGAGGCGCGGCTCAACGGTGCGCTGCAATTGTCGAAAGGGCTGGCGAAGGCCGCGGATTGA
PROTEIN sequence
Length: 1049
QLVLTTANAATQRTLTPFRIRQLVANLKPGERISRERLAALLQANGYVRTDTVHDAGEYAIRGGIVDLFPSGEEQALRLDFFGDEIESVRTFDPADQRTTGRIDGFTLLPASEALLDEDSIKRFRTRYRETFGATATGDPLYQAVSDGRRLAGMEHWLPLFEEKLASIFDHLGEDVLVIRDSGVTAAAEARLEAIADYYENRKRAEAAQPGSYRALTARTLYRDDAEWRAGLDAATAHLTTSFHEPESASVVDFGVDGARDFAPDRAAGTNVYEAVVAHLAKLRKDGRTPVLASYSIGARDRLGNLLKDHGLNGAKPVETWQEALGVGETQVALVVLPLDHGFTAPRVGLLTEQDMLGDRLVRRQKRRKSADAFLAELATLSPGDLVVHVDHGIGRYEGLTSIPVGKAPHDCVALTYAGGDKLYVPVENLEVLSRYGSSEEGAALDRLGGEAWQRRKARMKERIREIAGELIAVAAERALRTGEVAEPDSNGFPTFVDRFPYEETDDQDRAIEDVLADLSAGKPMDRLIVGDVGFGKTEVALRAAFVAAMAGMQVALVCPTTLLARQHYQNFVARFEGFPINIGRLSRLVSANESKATRERLASGDLDIIIGTHAVLAKSVEFKRLGLVIVDEEQRFGVTHKERLKALKSDVHVLTLTATPIPRTLQMAMSGLRELSVIQTPPVDRLAVRTYVMPWDPVVLREALLREHYRGGQSFLVTPRIADLPDIEEYLRNEVPEIRYVIAHGQMAAGEVEERMSAFYDKKFEVLVSTTIIESGIDIPSANTMIVNRADRFGLAQLYQLRGRVGRSKTRAYAYLVTPPERQMTDAAEKRLKVLSDLDSLGAGFQLASHDLDIRGAGNLLGDEQSGHIKEVGYELYQSMLEEAILDAKAGGLAERKRDFSPQITVDAPILIPEDYVPDLDLRMGLYRRLNELDDKQSLEAFAAEMIDRFGALPEPTENLIRVIEIKMNAKKACVAKMDIGPKGALVTFHDDRPPNIEGLLAYVQRLGAIAKLRPDSKFALTRSWPDAEARLNGALQLSKGLAKAAD*