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SCN18_14_9_16_R4_B_scaffold_4233_3

Organism: SCN18_14_9_16_R4_B_SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9_67_9

near complete RP 44 / 55 MC: 1 BSCG 47 / 51 MC: 1 ASCG 9 / 38 MC: 2
Location: comp(1078..1893)

Top 3 Functional Annotations

Value Algorithm Source
Formamidopyrimidine-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00103, ECO:0000256|SAAS:SAAS00020852}; Short=Fapy-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00103};; EC=3.2.2.23 {ECO:0000256|HAMAP-Rule:MF_00103};; DNA-(apurinic or apyrimidinic site) lyase MutM {ECO:0000256|HAMAP-Rule:MF_00103}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 73.8
  • Coverage: 271.0
  • Bit_score: 406
  • Evalue 1.70e-110
5-hydroxymethyluracil DNA glycosylase n=1 Tax=Sphingomonas echinoides RepID=UPI00026CCF58 similarity UNIREF
DB: UNIREF100
  • Identity: 81.1
  • Coverage: 270.0
  • Bit_score: 449
  • Evalue 2.10e-123
formamidopyrimidine-DNA glycosylase similarity KEGG
DB: KEGG
  • Identity: 72.0
  • Coverage: 271.0
  • Bit_score: 399
  • Evalue 5.50e-109

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Taxonomy

SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9 → Sphingomonas → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 816
ATGCCCGAGCTTCCCGAAGTAGAAACCACCGTCCGCGGGCTCGCGCCGGTGCTGGAGGGCGCGACGATCGCCGCGATCGAAACGCGGCGCCCCGATCTGCGTCGCCCGTTCCCGGTCGATCTGCGCCAGCGGATGACCGGCGCGCGCGTCACCGGGCTCGGGCGGCGCGCCAAATATGGCCTGATCGACACCGATCGCGGCGATACCCTGATCTTTCATCTCGGCATGTCGGGGCGATGGCGGATCGATCCGAGCGAATTGCTGCCGCACGATCATCTGCTGATCGATACCGGCGCCGGGCGGCGCGTCGCGCTCAACGACCCGCGGCGATTCGGCTCGGTCGATCTGTGGCCGAGCAATGCGCTGGCCGATTTCCCGGCCTTTGCTGCACTGGGGCCGGAGCCGCTGGGCCCCGATCTGACCGGGGCGGGGCTGCACAAGGCGCTCGCCGGGCGGCGCGCCTCGATCAAGCTGATGCTGCTCGACCAGCGAATCGTTGCCGGACTCGGCAATATCTATGTCTGCGAAGCGCTGTATCTCGCGCGGATCGCGCCGCAACGCCCCGCGGGCGATCTGTCGCGTGCCAAGCTCGACCGGCTGGTGGTGGCGATCCGCGAGGTTCTCACCTCGGCGATCGAGGCCGGCGGGTCGACCTTGCGCGATTATGCCCAGCCCGACGGCGAACTGGGCTATTTCTCCAAACAATTCGCGGTTTACGGGCGCGAAGGAGAAGCCTGTGCTTGCGGCGGCGTGGTGGCGCGCTATGCAGAGGGCGGGCGGTCGACGTTCTGGTGTCCAAAGTGCCAGCGTGGTTGA
PROTEIN sequence
Length: 272
MPELPEVETTVRGLAPVLEGATIAAIETRRPDLRRPFPVDLRQRMTGARVTGLGRRAKYGLIDTDRGDTLIFHLGMSGRWRIDPSELLPHDHLLIDTGAGRRVALNDPRRFGSVDLWPSNALADFPAFAALGPEPLGPDLTGAGLHKALAGRRASIKLMLLDQRIVAGLGNIYVCEALYLARIAPQRPAGDLSRAKLDRLVVAIREVLTSAIEAGGSTLRDYAQPDGELGYFSKQFAVYGREGEACACGGVVARYAEGGRSTFWCPKCQRG*