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SCN18_14_9_16_R4_B_scaffold_7040_1

Organism: SCN18_14_9_16_R4_B_SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9_67_9

near complete RP 44 / 55 MC: 1 BSCG 47 / 51 MC: 1 ASCG 9 / 38 MC: 2
Location: comp(21..2348)

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 89.7
  • Coverage: 777.0
  • Bit_score: 1385
  • Evalue 0.0
DNA-directed RNA polymerase subunit beta n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037A8279 similarity UNIREF
DB: UNIREF100
  • Identity: 90.7
  • Coverage: 777.0
  • Bit_score: 1397
  • Evalue 0.0
DNA-directed RNA polymerase subunit beta similarity KEGG
DB: KEGG
  • Identity: 89.7
  • Coverage: 777.0
  • Bit_score: 1385
  • Evalue 0.0

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Taxonomy

SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9 → Sphingomonas → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 2328
AGCAAGGTGACCGGCGAGGTCGTCTATCTCTCCGCAATAGAAGAGGCGAAGCACACGATCGCGCAGGCCAACGCCGAGGTCGATCCTGACGGCCGCCTGATCGAGGAACTGATCTCGGCGCGTCAGGCCGGTGAATTCCTGATGGCGCTGCCCGAGACGATCACGTTGATGGACGTGTCGCCGAAGCAGCTCGTCTCGGTCGCCGCCTCGCTGATCCCGTTCCTGGAGAACGACGACGCGAACCGCGCGTTGATGGGCTCGAACATGCAGCGCCAGGCGGTGCCGCTGGTCAAGGCCGAGGCGCCGTTCGTCGGCACCGGCATGGAGGAGACGGTTGCGCGCGATTCGGGCGCGGCCATCGCCGCCAAGCGCGCCGGTGTGATCGATCAGGTCGATGCCAGCCGTATCGTCGTCCGCGCGACGGGCGAGGTTTCGGCCGAGGAATCGGGCGTCGACATCTACACGCTGATGAAGTTCCAGCGCTCGAACCAGTCGACCTGCATCAACCAGCGCCCGCTGGTGAAGGTGGGCGACGTGGTCAACGCCGGCGACATCATCGCCGACGGCCCGTCGACCGAGTTCGGCGAGCTGGCGCTCGGCCGGAACGCGCTCGTCGCGTTCATGCCGTGGAACGGCTACAATTATGAGGACTCGATCCTCATCAGCGAGCGGATCGTGAAGGACGACGTGTTCACGTCGATCCACATCGACGAGTTCGAAGTGGCCGCCCGCGACACCAAGCTCGGGCCGGAAGACATCACCCGCGACATCCCGAACGTCGGCGAGGAAGCGCTGCGCAACCTCGACGAAGCGGGCATCGTCTATATCGGCGCCGAAGTGGAGCCGGGCGACATCCTGGTCGGCAAGATCACCCCGAAGGGCGAAAGCCCGATGACGCCGGAGGAAAAGCTCCTCCGCGCCATCTTCGGCGAAAAGGCCAGCGACGTGCGCGACACCTCGCTGCGTCTGCCGCCGGGCGTTGCCGGGACGATCGTCGACGTGCGCGTGTTCAATCGCCACGGCATCGACAAGGACGAGCGCGCGATGGCGATCGAGCGCGAGGAGATCGAGCGCCTGAAGAAGGACTCGGACGACGAGCGCACGATCCTCAACCGCGCGACCTGGTCGCGTCTGCGTGAGATGCTGCTGGGCCAGGTCGCGACCTCGGCGCCCAAGAGCATCAAGAAGGGCGTGACGATCGACATCGACGTGCTCGATTCGGTCGACCGCCATGAATGGTGGAAGTTCGCCGTGCAGGACGACAAGGTCCAGGGCGATCTCGAGACCGTCAAGACGCAGTATGACGAGGCGGCGAAGCGGATCACCGACAAGTTCCACGACCGGCGCGAGAAGCTGGAGCGTGGCGACGAGTTGCCGCCGGGCGTGCTCAAGATGGTCAAGGTGTTCGTCGCGGTGAAGCGCAAGCTGCAGCCGGGCGACAAGATGGCCGGCCGTCACGGCAACAAGGGCGTGATCAGCCGCATCCTGCCGGTGGAGGACATGCCGTTCCTCGCCGACGGGACCCCGGTCGATCTGGTGCTCAACCCGCTGGGCGTGCCGTCGCGTATGAACGTCGGGCAGATCTTCGAGACCCATCTGGGCTGGGCCGCACGCGGCCTGGGTCAGCAGGTCGCGCAGGCGCTCGAGGATTGGCGCGAGGCGAACCCCGACGCACGGCCCGGCGCGATGCCGGAACCGGTGAAGGATCGCCTCAAGACGATCTACGGCGAACATTATGTCGCCGATATCGACGGGCGTGACGGCACCGGCATCGTCGAGCTGGCGCAGAACCTGAAGGGCGGCGTTCCGATGGGCACCCCGGTGTTCGACGGCGCGCACGAGGCGGATGTCGCCTCGATGCTCGAACTGGCCGGGCTCGACACGTCGGGTCAGTCGGACCTGTTCGACGGGCGCACCGGCGAGAAGTTCGATCGCAAGGTGACGGTGGGCATCATCTACATGCTCAAGCTGCACCACCTCGTGGACGACAAGATCCACGCGCGTTCGAGCGGGCCGTACAGCCTCGTCACCCAGCAGCCGCTGGGCGGTAAGGCGCAGTTCGGCGGCCAGCGCTTCGGTGAAATGGAAGTGTGGGCGCTCCAGGCGTATGGCGCAGCCTATACGCTGCAGGAGATGCTGACGGTGAAGTCCGACGACGTGGTCGGCCGCACCAAGGTCTATGAAGCGATCGTCAAGGGCGACGACACCTTCGAGGCCGGCATCCCGGAGAGCTTCAACGTGCTCGTCAAGGAAATGCGCTCGCTGGGCCTCAACGTCGATTTGAAGTCGATGGACGAGGACGACGGTCTGGCCGAGGCGGCCGAGTAA
PROTEIN sequence
Length: 776
SKVTGEVVYLSAIEEAKHTIAQANAEVDPDGRLIEELISARQAGEFLMALPETITLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLVKAEAPFVGTGMEETVARDSGAAIAAKRAGVIDQVDASRIVVRATGEVSAEESGVDIYTLMKFQRSNQSTCINQRPLVKVGDVVNAGDIIADGPSTEFGELALGRNALVAFMPWNGYNYEDSILISERIVKDDVFTSIHIDEFEVAARDTKLGPEDITRDIPNVGEEALRNLDEAGIVYIGAEVEPGDILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTIVDVRVFNRHGIDKDERAMAIEREEIERLKKDSDDERTILNRATWSRLREMLLGQVATSAPKSIKKGVTIDIDVLDSVDRHEWWKFAVQDDKVQGDLETVKTQYDEAAKRITDKFHDRREKLERGDELPPGVLKMVKVFVAVKRKLQPGDKMAGRHGNKGVISRILPVEDMPFLADGTPVDLVLNPLGVPSRMNVGQIFETHLGWAARGLGQQVAQALEDWREANPDARPGAMPEPVKDRLKTIYGEHYVADIDGRDGTGIVELAQNLKGGVPMGTPVFDGAHEADVASMLELAGLDTSGQSDLFDGRTGEKFDRKVTVGIIYMLKLHHLVDDKIHARSSGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLQEMLTVKSDDVVGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGLNVDLKSMDEDDGLAEAAE*