ggKbase home page

SCN18_10_11_15_R4_B_scaffold_229_10

Organism: SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial_69_13

near complete RP 51 / 55 BSCG 51 / 51 MC: 1 ASCG 11 / 38 MC: 1
Location: 7156..7476

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00366};; RNA polymerase omega subunit {ECO:0000256|HAMAP-Rule:MF_00366}; Transcriptase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366}; TaxID=1234597 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium M86.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 80.2
  • Coverage: 106.0
  • Bit_score: 172
  • Evalue 2.80e-40
DNA-directed RNA polymerase subunit omega n=3 Tax=Ochrobactrum intermedium RepID=C4WQV6_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 80.2
  • Coverage: 106.0
  • Bit_score: 172
  • Evalue 2.00e-40
DNA-directed RNA polymerase, omega subunit similarity KEGG
DB: KEGG
  • Identity: 62.6
  • Coverage: 107.0
  • Bit_score: 127
  • Evalue 1.20e-27

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Ochrobactrum intermedium → Ochrobactrum → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 321
ATGGACCCGCATATCATCTTTGATTGCCAGAAGGTTCTCCCCAACAGGTTCGCGCTGACGCTAGCCGCGGCTGCGCGCAGCCGGGCGCTCGCTCGCGGCGCCGAGCCAAGGCTCGATGTGGCCGACTACAGTGTAAACGAGCTTGCGTTGCACGAGATCGCGGCAGGCGCGTTCACGCGGGATGAACTCGCGCCGTTTCTGCCAGGAGCGGATGAAAGGCGTCTTTTGCCTCCACCCGTCCCGGCTTCCAGGCTTCGCGACGGCGGCTCGATCAGCGCCGCCGTAGCACCCGCCTCCCGTCCGCGGGAGACGGTTCATTGA
PROTEIN sequence
Length: 107
MDPHIIFDCQKVLPNRFALTLAAAARSRALARGAEPRLDVADYSVNELALHEIAAGAFTRDELAPFLPGADERRLLPPPVPASRLRDGGSISAAVAPASRPRETVH*