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SCN18_10_11_15_R4_B_scaffold_379_54

Organism: SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial_69_13

near complete RP 51 / 55 BSCG 51 / 51 MC: 1 ASCG 11 / 38 MC: 1
Location: comp(48363..48947)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, RpoE n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11ID2_MESSB similarity UNIREF
DB: UNIREF100
  • Identity: 71.9
  • Coverage: 192.0
  • Bit_score: 264
  • Evalue 5.40e-68
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=472175 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor basaltis.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 72.5
  • Coverage: 193.0
  • Bit_score: 283
  • Evalue 2.00e-73
ECF subfamily RNA polymerase sigma-24 factor similarity KEGG
DB: KEGG
  • Identity: 71.9
  • Coverage: 192.0
  • Bit_score: 264
  • Evalue 1.50e-68

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Taxonomy

SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial → SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 585
ATGCCGCCGGTTCCGGGAGACACGCGACGTGAGTCGTCGTCGGCGCGTCAGGAGATCGTCGACCTCATCCCGGCCCTGCGCGCCTTCGCCCGCACCTTCTACCGCAACGTCACCGACGCCGACGACCTCGTGCAGGAGACGCTGACCAAGGGGCTGGCGAGCATCCACCAGTTCGAGCCCGGCACCAGCATGAAGTCGTGGCTGTTCACGATCATGCGCAACACCTTCTACACGAAGATCAAGGTGGCGGCGCGCGAGGCGCCGGGCGCGGCCGAATGCGCCTCGGCGCGGCCGGCGGCCGACCCCACGCAGGAATGGTCCGCCCGCGGGCGTGAGATCGCCGAGGCGATCCAGCGCCTGCCGACCCAGCAGCGCGAGGTGCTGATGCTGATCGGCGTGCTGGGCACCAGCTACGAGGACGCGGCGGAGATCTGCGGCTGCGCGATCGGCACGATCAAGAGCCGGCTCAACCGGGCGCGGCTGAAGCTGCTGGAGGAGCTGGGCGAGACGTCGGCGCGCTCCTCGGTCGAGCGGGCCGAGAGCCACCCGGTCGATTCCTTCGGCAAGCATTCCGTCTTCGGCTGA
PROTEIN sequence
Length: 195
MPPVPGDTRRESSSARQEIVDLIPALRAFARTFYRNVTDADDLVQETLTKGLASIHQFEPGTSMKSWLFTIMRNTFYTKIKVAAREAPGAAECASARPAADPTQEWSARGREIAEAIQRLPTQQREVLMLIGVLGTSYEDAAEICGCAIGTIKSRLNRARLKLLEELGETSARSSVERAESHPVDSFGKHSVFG*