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SCN18_10_11_15_R1_B_scaffold_8011_1

Organism: SCN18_10_11_15_R1_B_Rhizobiales_65_8

near complete RP 43 / 55 MC: 4 BSCG 44 / 51 MC: 3 ASCG 10 / 38
Location: comp(3..3020)

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 70.0
  • Coverage: 1005.0
  • Bit_score: 1426
  • Evalue 0.0
transcription-repair coupling factor n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000361238E similarity UNIREF
DB: UNIREF100
  • Identity: 71.2
  • Coverage: 1006.0
  • Bit_score: 1443
  • Evalue 0.0
transcription-repair coupling factor similarity KEGG
DB: KEGG
  • Identity: 70.0
  • Coverage: 1005.0
  • Bit_score: 1426
  • Evalue 0.0

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Taxonomy

SCNPILOT_CONT_500_BF_Rhizobiales_64_17 → SCNPILOT_CONT_500_BF_Rhizobiales_64_17 → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 3018
GCGAACGCCATTCTCCAGCGTGTGCCGCCCCGCGATTTCCTGCGCCGCGCGCTCCGCCCCATGGCGCCCGGCCAGCGCGTCGACCGCACGCGCCTCATCGAGCGCCTGACGCGCGCCGGCTACGTGCGCGTCGGAACCGTCATGGAGCCGGGCGAGTTCGCCGTGCGCGGCAGCCTCGTCGATCTTTTCCCGCCGGGCCGCGCAACGCCTGTGCGTCTCGATTTCTTCGGCGACACCATCGAGAGCATCAAGGCCTTCGATCCCGAGACCCAGCGCACGGGAAAGATCGTCCAGAAGCTCGTGCTCATGCCGGTGAGCGAGATCGCCTACGGCCCCGATGCCGAGAGCCGCTTCCGTCAGGGCTATGTCGCAGCCTTCGGCGCCGTGAAAGGCGACGACACACTCTATGAGGCGATCAGCTCGGGCCAGCGCTATCCCGGCATGGAGCACTGGCTCGCGCTCTTCCATGAGCACATGGAGACGCTGTTCGACTACGCGCCGGATGCGCTGCTCAGCTTCGATCCCATGATGGACGAGACGGTCGCCGATCGCCTCGAGCAGATCCGCGATCACTACGAGGCGCGCGTGAACGGCCTCGAGACGACGGCCTTCGGCGCCGCGCCCTACAAGCCGCTCCCGCCGGATCGCACATACTTGAGCGACAGCGAATGGCGCAGCGTGCTCAAGAAGCGCTTCCTGCTGCGCTTCTCGGCGTTCGGCGCGACTCCTGCCGAGGATGCGCGGCAGCGTGATTTCGGCGGTCGGCCGGGGCGCACGTTCGCGACGGAGCGCAACAGCGAAGGCGTGAATGTCTTCGATGCCGTGATCGCGCATGTGAAAGCGATGCAAGCGAGCGGTAAGCGCATCGTCCTCGCTGCCTGGACGATGGGTGCCGGCGAACGCCTCGCGAACCTTCTTACCGAGCGCGGTCTCGCGAAGCCCACGCGCATCGCCAATCTCGCCGAAGGCCTCGTCCTGCCGCAGGCGACGCCGCTGCTCGCAACTCTCGGACTGGAGCGCGGTTTCGAGACGCCCGACCTCGCCGTCATTGCCGAGCAGGACATTCTCGGCGACCGCCTGATCCGCCCGAAAAAGCGCACGCGCCGCGCCGCCGATGTGATCACCGAGGCAACGAGCCTCACGGCCGGCGATCTCGTCGTGCATTCCGATCACGGCATCGGCCGCTTCATGGGCCTCAAGACCATCGAGGCGTTGGGTGCGCCCTATGACTGCCTCGAGATCGACTATGCCGGCGGCGACAAGCTCTATCTGCCGGTCCAGAACATCGAGCTCCTCTCGCGCTACGGCTCGGACGAGACGAACGCGCAGCTCGATCGCCTCGGCGGCGTCGGCTGGCAGACGCGCAAGGCCAAGCTCCGTCAGCGCCTCCGCGAGATCGCTGGCGAGCTGATCAAGGTCGCGGCCCTCCGCCAGCTCAAGACGGCGCCCGTGCTCGAGGCGCCCGAAGGCGCCTATGCCGAGTTCGTGACGCGCTTTCCGCACCAGGAGACCGAGGATCAGGCCCAGAGCATCGATGCCGTGCTCGGCGACCTCACTTCGGGCCGCCCCATGGACCGGCTCGTGTGCGGCGACGTCGGTTTCGGCAAGACGGAAGTCGGCCTGCGCGCGGCGTTCATTGCCGCCATGGCCGGCTTGCAGGTCGCCGTCGTCGTCCCAACGACTCTCCTTGCGCGCCAGCACTACAAGACCTTCGTCGAGCGCTTCAAAGGCCTGCCCATCCGCATTGGCCGCGCCTCGCGCCTCGTCAGCCCGAAGGAGCTTGCGGAAGTGAAAGCCGGCCTCAAGGACGGCACGATCGACATCGTCGTCGGCACGCACGCGCTGCTCGGCAAGCAGATCCAGTTTGCCCGTCTCGGCCTGCTCATCGTCGACGAGGAGCAGCACTTCGGCGTCGGCCACAAGGAGCGCCTGAAGCAGCTCAAGGAAGACGTCCACGTTCTCACGCTCACGGCAACGCCGATCCCGCGCACGCTCCAACTCGCGCTCTCGGGCGTGCGCGAGCTCTCGCTCATCACGACACCGCCGATCGATCGCCTCGCTGTGCGGACGTACATCTCGCCCTTCGATCCGATCATCATTCGCGAGGCCCTGCGCCGTGAGCGCCATCGTGGCGGCCAGTCCTTCTATGTCGTGCCGCGTATTGCCGATCTCGACGACGTGGCCGAATTCCTCACCGAGGAAGTGCCGGAGCTGCGCGTCGTGCGCGCGCACGGGCAACTGTCGCCTTCGCAGCTCGAAGATGTCATGAGTGCGTTCTACGACGGGCAGTACGATGTGCTGCTCTCGACGGCGATCGTGGAATCCGGCCTCGACATTCCGAATGCCAATACGCTGATCGTGCATCGCGCGGACATGTTCGGCCTCGCCCAGCTCTATCAGCTCCGCGGCCGCGTCGGGCGCTCCAAGACACGTGCCTATGCCTACCTGACCACACCGCCCGGCAAGCGCCTCACCGAGGGCGCCGAGAAGCGGCTCAAGGTCCTCCACTCGCTCGATACGCTGGGCGCCGGATTCTCGCTCGCCTCGCACGACCTCGATATTCGCGGCGCCGGCAACCTACTCGGCGACGAGCAGTCCGGCCATATTCGCGAGGTCGGCTTCGAGTTGTATCAGTCCATGCTCGAGGAGGCGATCGAGGCCATCCGCGGCGGCGACCTCGGCGATATCGACGAGCAATGGAGCCCGCAGATCACGCTCGGCACCCCCATGCTGCTGCCCGAGGGATACGTCGCCGACCTGCAGGTGCGCCTCGGCCTCTACCGCCGCCTCGCCACGCTCAAGACGCGCGAGGAGATCGACGCCTTTGCCGATGAGCTGATCGACCGCTTCGGGCCCCTCCCCGACGAGGTCGAGCATCTCCTGGATGTCATGGAGATCAAGGCGCTCTGCCGCCGCGCCGGCATTGCCGAGATCGATGCCGGACCGAAGGGGGCCTCGATCCTTTTCCGCAAGGGCCAGTTCGCCAATGCGCAAGGCCTCGTCGCCTTCATCCAGGCG
PROTEIN sequence
Length: 1006
ANAILQRVPPRDFLRRALRPMAPGQRVDRTRLIERLTRAGYVRVGTVMEPGEFAVRGSLVDLFPPGRATPVRLDFFGDTIESIKAFDPETQRTGKIVQKLVLMPVSEIAYGPDAESRFRQGYVAAFGAVKGDDTLYEAISSGQRYPGMEHWLALFHEHMETLFDYAPDALLSFDPMMDETVADRLEQIRDHYEARVNGLETTAFGAAPYKPLPPDRTYLSDSEWRSVLKKRFLLRFSAFGATPAEDARQRDFGGRPGRTFATERNSEGVNVFDAVIAHVKAMQASGKRIVLAAWTMGAGERLANLLTERGLAKPTRIANLAEGLVLPQATPLLATLGLERGFETPDLAVIAEQDILGDRLIRPKKRTRRAADVITEATSLTAGDLVVHSDHGIGRFMGLKTIEALGAPYDCLEIDYAGGDKLYLPVQNIELLSRYGSDETNAQLDRLGGVGWQTRKAKLRQRLREIAGELIKVAALRQLKTAPVLEAPEGAYAEFVTRFPHQETEDQAQSIDAVLGDLTSGRPMDRLVCGDVGFGKTEVGLRAAFIAAMAGLQVAVVVPTTLLARQHYKTFVERFKGLPIRIGRASRLVSPKELAEVKAGLKDGTIDIVVGTHALLGKQIQFARLGLLIVDEEQHFGVGHKERLKQLKEDVHVLTLTATPIPRTLQLALSGVRELSLITTPPIDRLAVRTYISPFDPIIIREALRRERHRGGQSFYVVPRIADLDDVAEFLTEEVPELRVVRAHGQLSPSQLEDVMSAFYDGQYDVLLSTAIVESGLDIPNANTLIVHRADMFGLAQLYQLRGRVGRSKTRAYAYLTTPPGKRLTEGAEKRLKVLHSLDTLGAGFSLASHDLDIRGAGNLLGDEQSGHIREVGFELYQSMLEEAIEAIRGGDLGDIDEQWSPQITLGTPMLLPEGYVADLQVRLGLYRRLATLKTREEIDAFADELIDRFGPLPDEVEHLLDVMEIKALCRRAGIAEIDAGPKGASILFRKGQFANAQGLVAFIQA