ggKbase | organisms

Consensus taxonomy: Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Metagenomic Context

Parent: SCN18_10_11_15_R1_B_UNK

Properties

Avg. coverage: 8.45 Longest contig: 25.99 Kbp Bin length: 3.64 Mbp GC content: 65.30 %

Contigs count: 769 Features count: 3963 rRNAs count: 0 tRNAs count: 29

Genome completeness

near complete RP 43 / 55 MC: 4 BSCG 44 / 51 MC: 3 ASCG 10 / 38

Description

Extracted from SCN18_10_11_15_R1_B_maxbin2_046

Displaying items 601-650 of 769 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
SCN18_10_11_15_R1_B_scaffold_19383 Species: Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15 (50%)	2	1402 bp	65.05	7.17	78.32
SCN18_10_11_15_R1_B_scaffold_14920 Species: SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17 (50%)	2	1762 bp	67.20	8.17	100.11
SCN18_10_11_15_R1_B_scaffold_18930 Species: SCNPILOT_EXPT_300_BF_Sphingomonas_67_13 (50%)	2	1433 bp	66.15	6.91	97.14
SCN18_10_11_15_R1_B_scaffold_8553 Species: Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15 (100%)	2	2853 bp	67.72	8.94	94.74
SCN18_10_11_15_R1_B_scaffold_25740 Species: SCNPILOT_CONT_300_BF_Rhizobiales_62_47 (50%)	2	1102 bp	65.70	7.49	75.68
SCN18_10_11_15_R1_B_scaffold_9399 Species: SCNPILOT_CONT_750_P_Mesorhizobium_63_10 (50%)	2	2639 bp	67.53	8.13	100.04
SCN18_10_11_15_R1_B_scaffold_16222 Species: Paracoccus sp. 361_CN-SCN_Paracoccus_21x (50%)	2	1642 bp	68.15	9.04	87.70
SCN18_10_11_15_R1_B_scaffold_12779 Species: SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41 (50%)	2	2022 bp	64.64	6.60	86.35
SCN18_10_11_15_R1_B_scaffold_16996 Species: SCNPILOT_CONT_500_BF_Rhizobiales_64_17 (50%)	2	1576 bp	66.05	8.66	89.47
SCN18_10_11_15_R1_B_scaffold_10925 Species: SCNPILOT_CONT_300_BF_Rhizobiales_62_47 (50%)	2	2314 bp	63.31	8.23	87.77
SCN18_10_11_15_R1_B_scaffold_11544 Species: Hyphomicrobium denitrificans (50%)	2	2206 bp	65.19	6.53	91.66
SCN18_10_11_15_R1_B_scaffold_6464 Species: SCNPILOT_CONT_750_BF_Rhodospirillales_68_10 (50%)	2	3597 bp	65.30	9.42	91.41
SCN18_10_11_15_R1_B_scaffold_12532 Species: SCNPILOT_CONT_1000_BF_Rhizobiales_65_79 (50%)	2	2056 bp	64.79	6.86	94.55
SCN18_10_11_15_R1_B_scaffold_18696 Species: SCNPILOT_EXPT_300_BF_Sphingomonas_67_13 (50%)	2	1449 bp	65.01	9.11	100.41
SCN18_10_11_15_R1_B_scaffold_11296 Species: SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial (100%)	2	2248 bp	67.70	9.61	99.15
SCN18_10_11_15_R1_B_scaffold_11808 Species: SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7 (50%)	2	2165 bp	63.88	8.31	93.95
SCN18_10_11_15_R1_B_scaffold_16496 Species: SCNPILOT_CONT_500_BF_Rhizobiales_64_17 (50%)	2	1618 bp	64.46	8.81	96.23
SCN18_10_11_15_R1_B_scaffold_10425 Species: SCNPILOT_EXPT_1000_BF_Devosia_62_26 (50%)	2	2414 bp	63.67	9.82	92.71
SCN18_10_11_15_R1_B_scaffold_12541 Species: SCNPILOT_CONT_750_BF_Rhodospirillales_68_10 (50%)	2	2054 bp	67.48	7.96	89.53
SCN18_10_11_15_R1_B_scaffold_26886 Species: SCNPILOT_EXPT_1000_BF_Devosia_62_26 (50%)	2	1063 bp	64.35	9.03	86.92
SCN18_10_11_15_R1_B_scaffold_16245 Species: SCNPILOT_CONT_500_BF_Rhizobiales_64_17 (100%)	2	1640 bp	64.82	8.23	73.72
SCN18_10_11_15_R1_B_scaffold_26888 Species: SCNPILOT_CONT_750_BF_Rhodospirillales_68_10 (50%)	2	1063 bp	65.00	7.90	89.18
SCN18_10_11_15_R1_B_scaffold_16759 Species: SCNPILOT_CONT_750_BF_Rhodospirillales_70_18 (50%)	2	1595 bp	65.02	6.11	98.75
SCN18_10_11_15_R1_B_scaffold_13074 Species: SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14 (50%)	2	1977 bp	64.09	8.27	88.77
SCN18_10_11_15_R1_B_scaffold_20219 Species: SCNPILOT_CONT_750_BF_Rhodospirillales_68_10 (50%)	2	1352 bp	67.75	8.10	91.42
SCN18_10_11_15_R1_B_scaffold_10184 Species: SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17 (50%)	2	2462 bp	65.68	6.46	93.22
SCN18_10_11_15_R1_B_scaffold_16769 Species: SCNPILOT_EXPT_1000_BF_Devosia_62_26 (50%)	2	1594 bp	67.25	7.81	85.45
SCN18_10_11_15_R1_B_scaffold_8853 Species: SCNPILOT_CONT_300_BF_Rhizobiales_62_47 (50%)	2	2772 bp	65.69	9.36	99.68
SCN18_10_11_15_R1_B_scaffold_13861 Species: CN-SCN_Phenylobacterium_31x (50%)	2	1883 bp	67.50	8.13	88.42
SCN18_10_11_15_R1_B_scaffold_21300 Species: SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39 (50%)	2	1292 bp	67.72	7.20	95.67
SCN18_10_11_15_R1_B_scaffold_40736 Species: SCNPILOT_CONT_750_BF_Rhodospirillales_68_10 (50%)	2	1476 bp	65.85	7.42	50.00
SCN18_10_11_15_R1_B_scaffold_21307 Species: SCNPILOT_CONT_750_BF_Rhodospirillales_68_10 (50%)	2	1292 bp	63.54	7.89	91.95
SCN18_10_11_15_R1_B_scaffold_8355 Species: Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15 (100%)	2	2911 bp	65.65	7.63	93.99
SCN18_10_11_15_R1_B_scaffold_16019 Species: SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39 (50%)	2	1660 bp	66.33	5.51	98.67
SCN18_10_11_15_R1_B_scaffold_11335 Species: Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15 (50%)	2	2241 bp	65.02	7.97	81.39
SCN18_10_11_15_R1_B_scaffold_12841 Species: SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41 (50%)	2	2013 bp	64.68	8.57	85.84
SCN18_10_11_15_R1_B_scaffold_10471 Species: SCNPILOT_CONT_500_BF_Rhizobiales_64_17 (50%)	2	2402 bp	67.74	7.37	85.43
SCN18_10_11_15_R1_B_scaffold_21064 Species: Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x (50%)	2	1305 bp	65.36	8.05	88.28
SCN18_10_11_15_R1_B_scaffold_9466 Species: Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x (50%)	2	2619 bp	65.10	8.19	91.29
SCN18_10_11_15_R1_B_scaffold_7920 Species: SCNPILOT_CONT_500_BF_Rhizobiales_64_17 (50%)	2	3051 bp	62.73	8.46	92.43
SCN18_10_11_15_R1_B_scaffold_8115 Species: SCNPILOT_CONT_1000_BF_Rhizobiales_65_18 (50%)	2	2984 bp	67.02	8.19	90.38
SCN18_10_11_15_R1_B_scaffold_19462 Species: SCNPILOT_CONT_750_BF_Rhodospirillales_68_10 (50%)	2	1396 bp	65.19	8.81	81.88
SCN18_10_11_15_R1_B_scaffold_14743 Species: SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial (50%)	2	1780 bp	66.46	9.27	85.28
SCN18_10_11_15_R1_B_scaffold_10223 Species: SCNPILOT_CONT_500_BF_Rhizobiales_64_17 (50%)	2	2455 bp	64.93	8.98	98.74
SCN18_10_11_15_R1_B_scaffold_27368 Species: SCNpilot_P_inoc_Rhodobacter_64_50 (50%)	2	1049 bp	65.87	10.01	96.95
SCN18_10_11_15_R1_B_scaffold_15109 Species: SCNPILOT_CONT_750_BF_Rhodospirillales_70_18 (50%)	2	1743 bp	64.89	6.28	83.48
SCN18_10_11_15_R1_B_scaffold_19211 Species: Brevundimonas diminuta_SCNPILOT_CONT_300_BF_Brevundimonas_67_6 (50%)	2	1413 bp	66.38	9.02	86.62
SCN18_10_11_15_R1_B_scaffold_16812 Species: SCNPILOT_CONT_750_BF_Rhodospirillales_68_10 (50%)	2	1591 bp	65.05	7.07	78.06
SCN18_10_11_15_R1_B_scaffold_28288 Species: SCNPILOT_CONT_500_BF_Rhizobiales_63_22 (50%)	2	1020 bp	64.31	10.29	78.82
SCN18_10_11_15_R1_B_scaffold_9226 Species: SCNPILOT_CONT_500_BF_Rhizobiales_64_17 (50%)	2	2678 bp	66.88	6.95	93.54

Displaying items 601-650 of 769 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

Warning! This will delete the current organism (SCN18_10_11_15_R1_B_Rhizobiales_65_8) and add all its contigs / scaffolds to the organism you choose below

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Other organism

SCN18_10_11_15_R1_B_Rhizobiales_65_8

Description

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Merge with other organism

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