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SCN18_10_11_15_R1_P_scaffold_5334_3

Organism: SCN18_10_11_15_R1_P_Stenotrophomonas_69_7

near complete RP 45 / 55 MC: 3 BSCG 42 / 51 MC: 7 ASCG 11 / 38 MC: 2
Location: 800..1717

Top 3 Functional Annotations

Value Algorithm Source
tRNA pseudouridine synthase D {ECO:0000256|HAMAP-Rule:MF_01082}; EC=5.4.99.27 {ECO:0000256|HAMAP-Rule:MF_01082};; tRNA pseudouridine(13) synthase {ECO:0000256|HAMAP-Rule:MF_01082}; tRNA pseudouridylate synthase D {ECO:0000256|HAMAP-Rule:MF_01082}; tRNA-uridine isomerase D {ECO:0000256|HAMAP-Rule:MF_01082}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 81.7
  • Coverage: 300.0
  • Bit_score: 490
  • Evalue 1.70e-135
truD; tRNA pseudouridine synthase D (EC:5.4.99.-) similarity KEGG
DB: KEGG
  • Identity: 81.0
  • Coverage: 300.0
  • Bit_score: 487
  • Evalue 2.30e-135
tRNA pseudouridine synthase D n=1 Tax=Pseudomonas geniculata RepID=UPI00029AAF18 similarity UNIREF
DB: UNIREF100
  • Identity: 81.3
  • Coverage: 300.0
  • Bit_score: 489
  • Evalue 2.10e-135

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Taxonomy

SCNpilot_P_inoc_Stenotrophomonas_69_27 → Stenotrophomonas → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 918
ATGACCGATCTTCCCGCGCTTCCCCTTGCCTACGGTGTACCGGTACTGCGCGCGCTGATGCGCAGCGTGCCGGAGGACTTCCAGGTCGATGAACTGCCCGCCTTCGAGGCGAGCGGCGAGGGCGAGCACCTGCTGCTGGACATCCGCAAGCGCGGCGCCAACACCGTGGCCGTGGCCAGGCAGCTGGCGCAGTGGGCCGGCGTGCCGGAGATGTGCGTCAGCTATGCCGGGCAGAAGGACCGGCATGCGGTGACCACGCAGCGCTTCAGCGTGCACCTGCCCAAGCGCGTCGCGCCGGACCTGGCGCTGCTGGAATCGGACGAAGTCCATGTGCTGGCCTCGACCTGGCACAACCGCAAACTGCAGCGCGGCGCGCTGGCCGGCAACCGCTTCAGGCTGGTGCTGCGTGAAGTGCGGGGCGAACGCCCTGCCATCGACGAGCGCCTGCAGGCCATCGCCGCGCGGGGCCTGCCCAACTGGTTCGGCGAGCAGCGTTTCGGCCGCGATGGCGGCAACGTGCCGGCCGCGCTGGCGATGTTCGCCGGCCGCCGGGTGCGCAAGGACCAGCGCTCCATGTTCCTGTCGGCGGCGCGTTCGGCGCTGTTCAACCGCGTGCTGGCCGCGCGGGTGGAACAGGGCGACTGGGACGGCGCGCTGGAGGGCGAGGTGTGGATGCTCGACGGCAGCCGCTCGGTGTTCGGCCCCGAGCCGATGAGCGAAGCCCTGGCCGAGCGCCTGGCGCGGTTCGACATCCATCCCAGCGGGCCGTTGTGGGGGGCGGGCGAACTGCGCGCCACCGGCGCGGCGCTGGAACTGGAGCAGGCGGCGCTGGCCGACGAGCAGGCATTGGCGCTGCGCGCCGGCCTGGAACAGGCCGGATTGAAGCAGGAGCGGCGCGCGCTGCGCCTGCGCCCGGCG
PROTEIN sequence
Length: 306
MTDLPALPLAYGVPVLRALMRSVPEDFQVDELPAFEASGEGEHLLLDIRKRGANTVAVARQLAQWAGVPEMCVSYAGQKDRHAVTTQRFSVHLPKRVAPDLALLESDEVHVLASTWHNRKLQRGALAGNRFRLVLREVRGERPAIDERLQAIAARGLPNWFGEQRFGRDGGNVPAALAMFAGRRVRKDQRSMFLSAARSALFNRVLAARVEQGDWDGALEGEVWMLDGSRSVFGPEPMSEALAERLARFDIHPSGPLWGAGELRATGAALELEQAALADEQALALRAGLEQAGLKQERRALRLRPA