ggKbase home page

SCN18_10_11_15_R1_P_scaffold_8324_2

Organism: SCN18_10_11_15_R1_P_Stenotrophomonas_69_7

near complete RP 45 / 55 MC: 3 BSCG 42 / 51 MC: 7 ASCG 11 / 38 MC: 2
Location: comp(837..1280)

Top 3 Functional Annotations

Value Algorithm Source
RNA 2',3'-cyclic phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_01940}; Short=RNA 2',3'-CPDase {ECO:0000256|HAMAP-Rule:MF_01940};; EC=3.1.4.- {ECO:0000256|HAMAP-Rule:MF_01940};; TaxID=325777 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas axonopodis pv. vasculorum.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 55.9
  • Coverage: 145.0
  • Bit_score: 154
  • Evalue 6.40e-35
2''''-5'''' RNA ligase n=1 Tax=Xanthomonas sp. M97 RepID=UPI0003B322B6 similarity UNIREF
DB: UNIREF100
  • Identity: 57.9
  • Coverage: 145.0
  • Bit_score: 161
  • Evalue 3.70e-37
2'-5' RNA ligase similarity KEGG
DB: KEGG
  • Identity: 55.2
  • Coverage: 145.0
  • Bit_score: 152
  • Evalue 6.40e-35

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

SCNpilot_P_inoc_Stenotrophomonas_69_27 → Stenotrophomonas → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 444
GAACATGGCCTGGACGGGCGTCCACTGGCGCGCGAGCGCCTGCACGTCACCCTGCACCACCTGGGCGATTACGCCGGCCTGCCGCCGAGCCTGCTGGCCAGGGTGCAGCAGGCCGCGGCGCGGCGGCGGATGCCGGAATTCGAGGTGTGCTTCGACGAAGTCGGCAGTTTCGCCGGTGGCCGCCAGCACCCGTTCGTGCTGCGCAGCGGACATGGCGCCGATCTGCTGCACGGCCTGCACCAGGAGCTGGCGCGCTGCCTGCAGGGTATGGGCAGCCGCCCCGATCCGGCATTCACCCCGCACCTGACCCTGCTCTACGACAAGCGGCGCATGCCGCTGCAGCCGGTGCAGCCGATGCGCTGGCTGGTGCGCGAGTTCGTGCTGATCCGCAGTTATCTGGGGCAGACCCGCTACCAGCTGGAAGGACGCTGGTCGTTGGGGTGA
PROTEIN sequence
Length: 148
EHGLDGRPLARERLHVTLHHLGDYAGLPPSLLARVQQAAARRRMPEFEVCFDEVGSFAGGRQHPFVLRSGHGADLLHGLHQELARCLQGMGSRPDPAFTPHLTLLYDKRRMPLQPVQPMRWLVREFVLIRSYLGQTRYQLEGRWSLG*