ggKbase home page

SCN18_10_11_15_R1_P_scaffold_3349_1

Organism: SCN18_10_11_15_R1_P_Stenotrophomonas_69_7

near complete RP 45 / 55 MC: 3 BSCG 42 / 51 MC: 7 ASCG 11 / 38 MC: 2
Location: 1..2247

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 95.1
  • Coverage: 749.0
  • Bit_score: 1411
  • Evalue 0.0
DNA-directed RNA polymerase subunit beta n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000312F12B similarity UNIREF
DB: UNIREF100
  • Identity: 95.3
  • Coverage: 749.0
  • Bit_score: 1417
  • Evalue 0.0
rpoB; DNA-directed RNA polymerase subunit beta similarity KEGG
DB: KEGG
  • Identity: 94.9
  • Coverage: 749.0
  • Bit_score: 1409
  • Evalue 0.0

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

SCNpilot_P_inoc_Stenotrophomonas_69_27 → Stenotrophomonas → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 2247
TCGCCGGGCGTGTTCTTCGACCACGACCGCGGCAAGACCCACAGCTCGGGCAAGCTGCTGTACAGCGCCCGCATCATCCCCTACCGCGGCTCCTGGCTGGACTTCGAGTTCGACCCGAAGGATGCGCTGTTCACCCGTATCGACCGCCGCCGCAAGCTGCCGGTGTCGATCCTGCTGCGCGCACTCGGCTACAACAACGAAGAAATGCTCAACGAGTTCTTCGACATCAACACCTTCCACATCCTGCCGGAAGGCGAGGGTGTGCAGCTGGAGCTGGTGGCCGAGCGCCTGCGTGGCGAAACCCTGGGCTTCGACCTGGCTGATGGCGACAAGGTCATCGTGGAAGCCGGCAAGCGCATCACCGCGCGCCACGTCAAGCAGCTGCAGGCCTCGGGCATCGCCGCGCTGGCCGTGCCGGACGACTACCTGGTGGGCCGCATCCTGTCGCATGACGTGGTCGACGCCAACACCGGCGAACTGCTGGCCCAGGCCAACGACGAGATCACCGAAGAGCAGCTGCAGAACTTCCGCAAGGCCGGCGTGGATGCGGTCGGCACCCTGTGGGTGAACGACCTGGACCGTGGCCCGTACCTGTCCAACACCCTGCGCATCGACCCGACCAAGACCCAGCTCGAGGCCCTGGTCGAGATCTACCGCATGATGCGCCCGGGCGAGCCGCCGACCAAGGACGCCGCGCAGAACCTGTTCCACAACCTGTTCTTCACCTTCGAGCGCTACGACCTGTCCACGGTCGGCCGCATGAAGTTCAACCGCCGTGTCGGCCGCAAGGAAGTCACCGGCGAAGCCGTGCTGTACGACAGCAAGTACTTCGGCGAGCGCAACGACGAAGAGTCCAAGCGCCTGGTCTCCACCCATGGCGACGGGTCCGACATCCTGGACGTGATCAAGGTCCTGACCGAGATCCGCAACGGTCGCGGCGTGGTCGATGACATCGACCACCTGGGCAACCGTCGCGTGCGTTCGGTCGGCGAAATGGCCGAGAACGTGTTCCGCGTGGGCCTGGTCCGCGTCGAGCGCGCGGTCAAGGAGCGCCTGTCGATGGCCGAGTCCGAGGGCCTGACCCCGCAGGAGCTGATCAACGCCAAGCCGGTCGCCGCTGCCATCAAGGAATTCTTCGGTTCCTCGCAGCTGTCGCAGTTCATGGACCAGAACAACCCGCTGTCGGAAGTGACGCACAAGCGCCGCGTCTCGGCGCTGGGCCCGGGCGGCCTGACCCGCGAGCGCGCCGGCTTCGAAGTGCGCGACGTGCACCCGACCCATTACGGCCGCGTCTGCACCATCGAAACCCCGGAAGGCCCGAACATCGGCCTGATCAACTCGCTGGCCGTGTTCGCCCGCACCAACCAGTACGGTTTCCTCGAGACCCCGTACCGCAAGGTCGTGGACGGCAAGGTCACCGACGACGTCGAGTACCTGTCGGCGATCGAGGAGAACGAGTACGTCATCGCCCAGGCCAACGCCCTGACCGATGCCAAGAACATGCTCACCGAGCAGTTCGTGCCGTGCCGCTACCAGGGCGAGTCGCTACTGAAGCCGCCGGCGGAAGTGCACTTCATGGACGTCTCGCCGATGCAGACCGTGTCGGTCGCCGCGGCGCTGGTGCCGTTCCTCGAGCACGACGACGCCAACCGCGCACTGATGGGCGCGAACATGCAGCGCCAGGCCGTTCCGACCCTGCGTGCGCAGAAGCCGCTGGTAGGCACCGGCATCGAGCGCGCGGTGGCGCGTGACTCGGGCGTGACCGTGAACGCCCGTCGTGGCGGCGATATCGTGCAGATCGACGCCGGCCGCATCGTGGTCAAGGTCAACGAGAACGAGTTCACCGACGCGTCCGACGCCGGCGTCGACATCTACAACCTGATCAAGTACACCCGCTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAACGTGGGCGACGGGATCGCGCGCGGCGACGTGCTGGCCGACGGCCCGTCCACCGACATCGGCGAGCTGGCCCTGGGCCAGAACATGCTGGTCGCGTTCATGCCGTGGAACGGCTACAACTTCGAAGACTCCATCCTGCTCTCCGAGCGCGTGGTGGAAGAGGATCGCTACACCACGATCCACATCGAAGAGCTGTCCTGCGTCGCGCGCGACACCAAGCTGGGGCCGGAGGAAATCTCGGCCGACATCCCGAACGTCTCCGAGCAGGCGCTGAACCGCCTGGACGAGAGCGGCGTGGTGTACATCGGTGCG
PROTEIN sequence
Length: 749
SPGVFFDHDRGKTHSSGKLLYSARIIPYRGSWLDFEFDPKDALFTRIDRRRKLPVSILLRALGYNNEEMLNEFFDINTFHILPEGEGVQLELVAERLRGETLGFDLADGDKVIVEAGKRITARHVKQLQASGIAALAVPDDYLVGRILSHDVVDANTGELLAQANDEITEEQLQNFRKAGVDAVGTLWVNDLDRGPYLSNTLRIDPTKTQLEALVEIYRMMRPGEPPTKDAAQNLFHNLFFTFERYDLSTVGRMKFNRRVGRKEVTGEAVLYDSKYFGERNDEESKRLVSTHGDGSDILDVIKVLTEIRNGRGVVDDIDHLGNRRVRSVGEMAENVFRVGLVRVERAVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGPNIGLINSLAVFARTNQYGFLETPYRKVVDGKVTDDVEYLSAIEENEYVIAQANALTDAKNMLTEQFVPCRYQGESLLKPPAEVHFMDVSPMQTVSVAAALVPFLEHDDANRALMGANMQRQAVPTLRAQKPLVGTGIERAVARDSGVTVNARRGGDIVQIDAGRIVVKVNENEFTDASDAGVDIYNLIKYTRSNQNTCINQRPLVNVGDGIARGDVLADGPSTDIGELALGQNMLVAFMPWNGYNFEDSILLSERVVEEDRYTTIHIEELSCVARDTKLGPEEISADIPNVSEQALNRLDESGVVYIGA