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SCN18_13_7_16_R2_B_Actinobacteria_71_7

In projects: SCN18_13_7_16_R2_B  |  scn18_genomes

Consensus taxonomy: Actinobacteria  →  Actinobacteria  →  Bacteria

Metagenomic Context

Parent: SCN18_13_7_16_R2_B_UNK

Properties

Avg. coverage: 6.73 Longest contig: 10.20 Kbp Bin length: 2.61 Mbp GC content: 70.68 %
Contigs count: 1267 Features count: 3540 rRNAs count: 0 tRNAs count: 17

Genome completeness

partial RP 26 / 55 BSCG 28 / 51 ASCG 7 / 38

Description

Extracted from SCN18_13_7_16_R2_B_concoct_064

Displaying items 1201-1250 of 1267 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCN18_13_7_16_R2_B_scaffold_6502
Species: SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13 (100%)
3 2966 bp 70.80 6.63 100.24
SCN18_13_7_16_R2_B_scaffold_6908
Order: Pseudonocardiales (80%)
5 2858 bp 73.09 5.88 100.25
SCN18_13_7_16_R2_B_scaffold_23349
Species: SCNPILOT_EXPT_1000_BF_Microbacterium_69_10 (50%)
2 1215 bp 72.59 7.53 100.25
SCN18_13_7_16_R2_B_scaffold_8974
Species: SCNPILOT_CONT_1000_BF_Actinobacteria_69_20 (66.67%)
3 2418 bp 72.42 7.51 100.25
SCN18_13_7_16_R2_B_scaffold_16249
Species: SCNPILOT_SOLID_1_TRIM150_Microbacterium_69_53 (66.67%)
3 1595 bp 75.05 6.68 100.25
SCN18_13_7_16_R2_B_scaffold_16697
Species: SCNPILOT_CONT_1000_P_Pseudonocardia_72_23 (50%)
2 1565 bp 73.35 7.67 100.26
SCN18_13_7_16_R2_B_scaffold_24861
Species: SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13 (50%)
2 1158 bp 74.44 7.64 100.26
SCN18_13_7_16_R2_B_scaffold_25878
Species: SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13 (66.67%)
3 1119 bp 71.94 6.70 100.27
SCN18_13_7_16_R2_B_scaffold_8167
Class: Actinobacteria (60%)
5 2573 bp 71.75 6.65 100.27
SCN18_13_7_16_R2_B_scaffold_13546
Species: Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x (50%)
4 1821 bp 69.91 8.40 100.28
SCN18_13_7_16_R2_B_scaffold_27411
Species: SCNPILOT_CONT_500_BF_Cellulomonas_73_12_partial (50%)
2 1068 bp 71.54 6.74 100.28
SCN18_13_7_16_R2_B_scaffold_27993
Species: CN-SCN_Microbacterium_200x (50%)
2 1050 bp 76.19 7.14 100.29
SCN18_13_7_16_R2_B_scaffold_19760
Species: SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13 (100%)
3 1382 bp 72.36 7.60 100.29
SCN18_13_7_16_R2_B_scaffold_12105
Species: SCNPILOT_CONT_1000_P_Pseudonocardia_72_23 (66.67%)
3 1971 bp 73.82 7.76 100.30
SCN18_13_7_16_R2_B_scaffold_22393
Species: SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13 (50%)
2 1256 bp 73.65 8.24 100.32
SCN18_13_7_16_R2_B_scaffold_10466
Species: SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13 (50%)
4 2177 bp 70.83 6.89 100.32
SCN18_13_7_16_R2_B_scaffold_22831
Species: SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9 (50%)
2 1238 bp 72.05 6.54 100.32
SCN18_13_7_16_R2_B_scaffold_3162
Class: Actinobacteria (71.43%)
7 4910 bp 69.16 7.09 100.33
SCN18_13_7_16_R2_B_scaffold_23506
Species: SCNPILOT_CONT_500_BF_Cellulomonas_73_12_partial (50%)
2 1208 bp 74.50 7.08 100.33
SCN18_13_7_16_R2_B_scaffold_9558
Class: Actinobacteria (66.67%)
3 2314 bp 74.55 5.64 100.35
SCN18_13_7_16_R2_B_scaffold_19158
Species: SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13 (66.67%)
3 1414 bp 71.50 6.68 100.35
SCN18_13_7_16_R2_B_scaffold_5450
Species: SCNPILOT_CONT_1000_BF_Actinobacteria_69_20 (75%)
4 3336 bp 68.91 7.15 100.36
SCN18_13_7_16_R2_B_scaffold_12520
Species: Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x (50%)
2 1925 bp 74.13 7.32 100.36
SCN18_13_7_16_R2_B_scaffold_4024
Class: Actinobacteria (66.67%)
3 4095 bp 67.55 7.40 100.37
SCN18_13_7_16_R2_B_scaffold_28517
Species: SCNPILOT_CONT_500_BF_Cellulomonas_73_12_partial (50%)
2 1034 bp 72.15 6.38 100.39
SCN18_13_7_16_R2_B_scaffold_14492
Species: SCNPILOT_CONT_500_BF_Cellulomonas_73_12_partial (66.67%)
3 1730 bp 73.76 6.94 100.41
SCN18_13_7_16_R2_B_scaffold_19733
Species: SCNPILOT_SOLID2_TRIM150_Actinobacteria_69_241 (66.67%)
3 1383 bp 74.19 6.07 100.43
SCN18_13_7_16_R2_B_scaffold_6325
Species: CN-SCN_Microbacterium_18x (100%)
4 3022 bp 72.37 7.89 100.46
SCN18_13_7_16_R2_B_scaffold_13022
Class: Actinobacteria (66.67%)
3 1872 bp 72.17 7.85 100.48
SCN18_13_7_16_R2_B_scaffold_15512
Species: SCNPILOT_CONT_1000_BF_Actinobacteria_69_20 (100%)
2 1648 bp 71.91 5.92 100.49
SCN18_13_7_16_R2_B_scaffold_5175
Order: Pseudonocardiales (60%)
5 3451 bp 72.56 7.30 100.49
SCN18_13_7_16_R2_B_scaffold_19300
Species: SCNPILOT_CONT_1000_BF_Actinobacteria_69_20 (50%)
2 1406 bp 73.83 7.47 100.50
SCN18_13_7_16_R2_B_scaffold_16186
Species: SCNPILOT_CONT_1000_P_Pseudonocardia_72_23 (100%)
2 1600 bp 71.69 5.25 100.50
SCN18_13_7_16_R2_B_scaffold_9705
Species: SCNPILOT_CONT_1000_P_Pseudonocardia_72_23 (100%)
2 2292 bp 75.74 7.26 100.52
SCN18_13_7_16_R2_B_scaffold_20781
Species: SCNPILOT_EXPT_300_BF_Actinomycetales_72_7_partial (66.67%)
3 1334 bp 72.19 8.55 100.52
SCN18_13_7_16_R2_B_scaffold_6407
Species: SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13 (60%)
5 2993 bp 71.33 7.47 100.54
SCN18_13_7_16_R2_B_scaffold_6670
Species: Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x (100%)
3 2918 bp 74.19 6.22 100.55
SCN18_13_7_16_R2_B_scaffold_22213
Species: SCNPILOT_CONT_500_BF_Cellulomonas_73_12_partial (50%)
2 1265 bp 71.54 5.22 100.55
SCN18_13_7_16_R2_B_scaffold_14122
Genus: Cellulomonas (66.67%)
3 1763 bp 72.26 6.47 100.57
SCN18_13_7_16_R2_B_scaffold_28404
Species: SCNPILOT_CONT_500_BF_Actinomycetales_73_43 (50%)
2 1038 bp 72.35 7.37 100.58
SCN18_13_7_16_R2_B_scaffold_16877
Class: Actinobacteria (66.67%)
3 1553 bp 74.11 7.24 100.64
SCN18_13_7_16_R2_B_scaffold_12645
Species: SCNpilot_BF_INOC_Solirubrobacterales_68_7 (100%)
2 1912 bp 66.63 7.45 100.73
SCN18_13_7_16_R2_B_scaffold_9657
Class: Actinobacteria (66.67%)
3 2299 bp 71.29 6.59 100.74
SCN18_13_7_16_R2_B_scaffold_16488
Species: SCNPILOT_CONT_1000_BF_Actinobacteria_69_20 (66.67%)
3 1578 bp 68.50 6.46 100.76
SCN18_13_7_16_R2_B_scaffold_18159
Phylum: Actinobacteria (50%)
4 1473 bp 73.52 7.43 100.82
SCN18_13_7_16_R2_B_scaffold_28892
Species: Amycolatopsis orientalis (50%)
2 1023 bp 72.92 8.50 100.88
SCN18_13_7_16_R2_B_scaffold_7050
Species: SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13 (50%)
4 2819 bp 70.91 5.91 100.89
SCN18_13_7_16_R2_B_scaffold_27088
Species: SCNpilot_P_inoc_Microbacterium_67_17 (50%)
2 1079 bp 73.68 7.37 100.93
SCN18_13_7_16_R2_B_scaffold_15054
Class: Actinobacteria (66.67%)
3 1684 bp 75.12 6.24 101.19
SCN18_13_7_16_R2_B_scaffold_22533
Species: SCNpilot_P_inoc_Microbacterium_67_17 (50%)
2 1251 bp 72.66 7.19 101.20
Displaying items 1201-1250 of 1267 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.