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SCN18_14_9_16_R4_B_Actinobacteria_68_6

In projects: SCN18_14_9_16_R4_B  |  scn18_genomes  |  SCN_ET-SeqDB_Dereplicated

Consensus taxonomy: Actinobacteria  →  Actinobacteria  →  Bacteria

Metagenomic Context

Parent: SCN18_14_9_16_R4_B_UNK

Properties

Avg. coverage: 6.26 Longest contig: 8.22 Kbp Bin length: 1.81 Mbp GC content: 68.21 %
Contigs count: 844 Features count: 2311 rRNAs count: 0 tRNAs count: 17

Genome completeness

partial RP 33 / 55 MC: 3 BSCG 35 / 51 MC: 2 ASCG 7 / 38 MC: 1

Description

Extracted from CN18_14_9_16_R4_B_concoct_035

Displaying items 651-700 of 844 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCN18_14_9_16_R4_B_scaffold_14833
Species: Microbacterium ginsengisoli_SCNPILOT_CONT_1000_P_Microbacterium_71_138 (100%)
2 1127 bp 69.30 5.59 96.89
SCN18_14_9_16_R4_B_scaffold_11920
Species: BJP_08E140C01_10KDA_Microbacterium_68_10 (50%)
2 1394 bp 69.58 6.03 98.78
SCN18_14_9_16_R4_B_scaffold_7762
Species: Microbacterium ginsengisoli_SCNPILOT_CONT_1000_P_Microbacterium_71_138 (50%)
2 2119 bp 69.14 5.38 92.59
SCN18_14_9_16_R4_B_scaffold_9129
Species: Leucobacter komagatae (50%)
2 1803 bp 68.11 5.82 71.88
SCN18_14_9_16_R4_B_scaffold_12434
Species: SCNpilot_P_inoc_Microbacterium_67_17 (50%)
2 1335 bp 69.44 6.63 95.06
SCN18_14_9_16_R4_B_scaffold_8482
Species: SCNPILOT_SOLID_1_TRIM150_Microbacterium_69_53 (50%)
2 1942 bp 66.27 5.95 91.76
SCN18_14_9_16_R4_B_scaffold_9643
Species: CN-SCN_Microbacterium_18x (50%)
2 1702 bp 69.27 6.79 98.18
SCN18_14_9_16_R4_B_scaffold_7765
Species: CN-SCN_Microbacterium_27x (50%)
2 2119 bp 69.14 7.15 100.09
SCN18_14_9_16_R4_B_scaffold_11156
Species: SCNpilot_BF_INOC_Solirubrobacterales_68_7 (50%)
2 1479 bp 71.40 7.81 85.19
SCN18_14_9_16_R4_B_scaffold_7254
Species: SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13 (50%)
2 2282 bp 61.31 5.32 100.31
SCN18_14_9_16_R4_B_scaffold_10878
Species: CN-SCN_Leifsonia_139x (50%)
2 1513 bp 67.61 5.85 93.39
SCN18_14_9_16_R4_B_scaffold_9646
Species: Microbacterium ginsengisoli_SCNPILOT_CONT_1000_P_Microbacterium_71_138 (100%)
2 1702 bp 69.21 4.94 91.13
SCN18_14_9_16_R4_B_scaffold_14584
Species: SCNpilot_BF_INOC_Solirubrobacterales_68_7 (100%)
2 1146 bp 71.12 6.28 92.41
SCN18_14_9_16_R4_B_scaffold_6087
Species: SCNPILOT_EXPT_1000_BF_Microbacterium_69_10 (50%)
2 2737 bp 69.93 7.34 80.89
SCN18_14_9_16_R4_B_scaffold_11928
Species: SCNPILOT_EXPT_750_BF_Actinomycetales_70_150 (50%)
2 1392 bp 69.47 5.17 92.67
SCN18_14_9_16_R4_B_scaffold_7770
Species: Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x (50%)
2 2117 bp 69.06 6.02 89.28
SCN18_14_9_16_R4_B_scaffold_12953
Species: SCNPILOT_EXPT_750_BF_Actinomycetales_70_150 (50%)
2 1282 bp 69.58 5.15 91.73
SCN18_14_9_16_R4_B_scaffold_15356
Species: SCNPILOT_SOLID2_TRIM150_Actinobacteria_69_241 (50%)
2 1092 bp 68.41 6.87 92.58
SCN18_14_9_16_R4_B_scaffold_10115
Species: CN-SCN_Microbacterium_27x (50%)
2 1623 bp 70.61 6.10 100.18
SCN18_14_9_16_R4_B_scaffold_15357
Species: SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13 (50%)
2 1092 bp 67.77 6.59 92.31
SCN18_14_9_16_R4_B_scaffold_12444
Species: SCNPILOT_EXPT_1000_BF_Microbacterium_69_10 (50%)
2 1334 bp 71.21 4.72 88.83
SCN18_14_9_16_R4_B_scaffold_16430
Species: Leucobacter komagatae (50%)
2 1021 bp 72.28 5.73 90.79
SCN18_14_9_16_R4_B_scaffold_6605
Species: SCNPILOT_SOLID_1_TRIM150_Microbacterium_69_53 (50%)
2 2515 bp 69.34 5.55 98.53
SCN18_14_9_16_R4_B_scaffold_10885
Species: SCNPILOT_SOLID_1_TRIM150_Microbacterium_69_53 (50%)
2 1512 bp 67.39 5.56 99.80
SCN18_14_9_16_R4_B_scaffold_7519
Species: CN-SCN_Leifsonia_139x (50%)
2 2189 bp 70.31 5.14 95.80
SCN18_14_9_16_R4_B_scaffold_10888
Species: CN-SCN_Microbacterium_27x (50%)
2 1512 bp 70.04 4.96 79.37
SCN18_14_9_16_R4_B_scaffold_12192
Species: SCNpilot_P_inoc_Microbacterium_67_17 (50%)
2 1361 bp 67.60 7.38 94.34
SCN18_14_9_16_R4_B_scaffold_13898
Species: SCNPILOT_EXPT_1000_BF_Actinomycetales_Beutenbergia_73_13 (50%)
2 1198 bp 71.87 5.26 92.40
SCN18_14_9_16_R4_B_scaffold_8498
Species: Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x (50%)
2 1938 bp 63.98 5.19 82.97
SCN18_14_9_16_R4_B_scaffold_8755
Species: CN-SCN_Microbacterium_18x (50%)
2 1876 bp 71.27 5.84 96.75
SCN18_14_9_16_R4_B_scaffold_12708
Species: SCNPILOT_CONT_1000_BF_Actinobacteria_69_20 (50%)
2 1307 bp 67.02 4.36 85.16
SCN18_14_9_16_R4_B_scaffold_14598
Species: CN-SCN_Microbacterium_18x (50%)
2 1145 bp 67.16 6.68 93.28
SCN18_14_9_16_R4_B_scaffold_6357
Species: SCNPILOT_EXPT_1000_BF_Actinomycetales_Beutenbergia_73_13 (50%)
2 2613 bp 63.22 6.14 73.13
SCN18_14_9_16_R4_B_scaffold_10127
Species: CN-SCN_Microbacterium_18x (100%)
2 1620 bp 68.58 7.31 85.19
SCN18_14_9_16_R4_B_scaffold_9920
Species: CN-SCN_Microbacterium_37x (50%)
2 1654 bp 69.89 5.80 91.23
SCN18_14_9_16_R4_B_scaffold_7274
Species: Microbacterium testaceum_SCNpilot_P_inoc_Microbacterium_70_36 (50%)
2 2274 bp 69.17 6.99 96.17
SCN18_14_9_16_R4_B_scaffold_13650
Species: SCNPILOT_EXPT_1000_BF_Actinomycetales_Beutenbergia_73_13 (50%)
2 1221 bp 67.81 5.16 89.43
SCN18_14_9_16_R4_B_scaffold_8505
Species: CN-SCN_Microbacterium_27x (50%)
2 1937 bp 67.53 5.65 99.59
SCN18_14_9_16_R4_B_scaffold_9666
Species: SCNPILOT_SOLID_1_TRIM150_Microbacterium_69_53 (50%)
2 1700 bp 69.18 7.06 99.88
SCN18_14_9_16_R4_B_scaffold_6363
Species: Microbacterium testaceum_SCNpilot_P_inoc_Microbacterium_70_36 (50%)
2 2609 bp 70.10 5.75 95.90
SCN18_14_9_16_R4_B_scaffold_14861
Species: SCNPILOT_SOLID_1_TRIM150_Microbacterium_69_53 (50%)
2 1125 bp 71.38 5.33 100.27
SCN18_14_9_16_R4_B_scaffold_8252
Species: CN-SCN_Microbacterium_37x (50%)
2 1999 bp 66.38 6.45 87.19
SCN18_14_9_16_R4_B_scaffold_14862
Species: CN-SCN_Microbacterium_27x (50%)
2 1125 bp 66.76 5.73 94.40
SCN18_14_9_16_R4_B_scaffold_13143
Species: SCNpilot_P_inoc_Microbacterium_67_17 (50%)
2 1265 bp 68.46 5.45 92.96
SCN18_14_9_16_R4_B_scaffold_13399
Species: SCNPILOT_EXPT_750_BF_Actinomycetales_70_150 (50%)
2 1243 bp 63.64 4.71 71.20
SCN18_14_9_16_R4_B_scaffold_12206
Species: SCNPILOT_EXPT_1000_BF_Microbacterium_69_10 (50%)
2 1360 bp 67.79 6.95 94.19
SCN18_14_9_16_R4_B_scaffold_12718
Species: SCNPILOT_EXPT_750_BF_Actinomycetales_70_150 (50%)
2 1306 bp 68.30 5.51 104.06
SCN18_14_9_16_R4_B_scaffold_13144
Species: CN-SCN_Microbacterium_27x (50%)
2 1265 bp 66.56 6.52 77.79
SCN18_14_9_16_R4_B_scaffold_13914
Species: SCNPILOT_SOLID_1_TRIM150_Microbacterium_69_53 (50%)
2 1197 bp 67.25 4.64 86.97
SCN18_14_9_16_R4_B_scaffold_6115
Species: Microbacterium testaceum_SCNpilot_P_inoc_Microbacterium_70_36 (50%)
2 2724 bp 65.75 5.23 93.28
Displaying items 651-700 of 844 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.