ggKbase home page

SCN18_14_9_16_R4_B_Actinobacteria_68_6

In projects: SCN18_14_9_16_R4_B  |  scn18_genomes  |  SCN_ET-SeqDB_Dereplicated

Consensus taxonomy: Actinobacteria  →  Actinobacteria  →  Bacteria

Description

Extracted from CN18_14_9_16_R4_B_concoct_035

Displaying items 501-550 of 844 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCN18_14_9_16_R4_B_scaffold_9436
Species: CN-SCN_Microbacterium_18x (66.67%)
3 1740 bp 65.46 5.09 94.48
SCN18_14_9_16_R4_B_scaffold_14109
Species: Leucobacter sp. UCD-THU (50%)
2 1181 bp 69.43 6.35 94.50
SCN18_14_9_16_R4_B_scaffold_6037
Species: CN-SCN_Leifsonia_139x (50%)
4 2758 bp 68.78 7.40 94.53
SCN18_14_9_16_R4_B_scaffold_12244
Species: CN-SCN_Leifsonia_139x (50%)
2 1355 bp 67.45 7.53 94.54
SCN18_14_9_16_R4_B_scaffold_11063
Class: Actinobacteria (50%)
6 2617 bp 69.70 6.13 94.57
SCN18_14_9_16_R4_B_scaffold_11334
Species: SCNPILOT_EXPT_750_BF_Actinomycetales_70_150 (50%)
2 1459 bp 66.42 6.37 94.59
SCN18_14_9_16_R4_B_scaffold_14051
Species: SCNPILOT_EXPT_750_BF_Actinomycetales_70_150 (50%)
2 1185 bp 69.62 5.19 94.68
SCN18_14_9_16_R4_B_scaffold_4844
Class: Actinobacteria (66.67%)
3 3551 bp 66.40 4.56 94.71
SCN18_14_9_16_R4_B_scaffold_6406
Species: SCNPILOT_CONT_500_BF_Cellulomonas_73_12_partial (50%)
2 2591 bp 69.74 5.73 94.71
SCN18_14_9_16_R4_B_scaffold_4366
Species: SCNPILOT_SOLID2_TRIM150_Actinobacteria_69_241 (60%)
5 3975 bp 65.76 6.04 94.72
SCN18_14_9_16_R4_B_scaffold_9488
Species: CN-SCN_Leifsonia_139x (100%)
2 1732 bp 67.03 6.15 94.75
SCN18_14_9_16_R4_B_scaffold_8539
Species: SCNPILOT_EXPT_1000_BF_Actinomycetales_Beutenbergia_73_13 (66.67%)
3 1925 bp 70.75 5.38 94.75
SCN18_14_9_16_R4_B_scaffold_6685
Order: Micrococcales (66.67%)
3 2482 bp 67.45 6.47 94.76
SCN18_14_9_16_R4_B_scaffold_4780
Phylum: Actinobacteria (80%)
5 3596 bp 68.21 6.47 94.77
SCN18_14_9_16_R4_B_scaffold_5309
Species: SCNPILOT_SOLID_1_TRIM150_Microbacterium_69_53 (66.67%)
3 3200 bp 63.63 5.48 94.78
SCN18_14_9_16_R4_B_scaffold_10570
Species: CN-SCN_Leifsonia_139x (50%)
2 1554 bp 66.41 5.50 94.79
SCN18_14_9_16_R4_B_scaffold_14606
Genus: Microbacterium (100%)
3 1145 bp 70.66 5.50 94.85
SCN18_14_9_16_R4_B_scaffold_11739
Class: Actinobacteria (100%)
3 2277 bp 66.93 6.39 94.86
SCN18_14_9_16_R4_B_scaffold_7010
Genus: Microbacterium (66.67%)
3 2360 bp 64.15 7.50 94.92
SCN18_14_9_16_R4_B_scaffold_7285
Species: Microbacterium ginsengisoli_SCNPILOT_CONT_1000_P_Microbacterium_71_138 (66.67%)
3 2269 bp 69.50 6.41 94.93
SCN18_14_9_16_R4_B_scaffold_6017
Species: SCNPILOT_EXPT_300_BF_Actinomycetales_72_7_partial (50%)
2 2770 bp 71.66 6.06 94.98
SCN18_14_9_16_R4_B_scaffold_10215
Species: Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x (50%)
2 1607 bp 69.26 5.41 95.02
SCN18_14_9_16_R4_B_scaffold_12434
Species: SCNpilot_P_inoc_Microbacterium_67_17 (50%)
2 1335 bp 69.44 6.63 95.06
SCN18_14_9_16_R4_B_scaffold_6726
Species: CN-SCN_Leifsonia_139x (50%)
2 2467 bp 70.49 5.72 95.10
SCN18_14_9_16_R4_B_scaffold_3878
Species: CN-SCN_Leifsonia_139x (50%)
4 4545 bp 70.08 6.96 95.12
SCN18_14_9_16_R4_B_scaffold_4975
Species: CN-SCN_Leifsonia_139x (80%)
5 3441 bp 66.29 6.89 95.12
SCN18_14_9_16_R4_B_scaffold_3570
Genus: Microbacterium (66.67%)
6 5071 bp 69.04 6.27 95.13
SCN18_14_9_16_R4_B_scaffold_5574
Species: SCNPILOT_EXPT_750_BF_Actinomycetales_70_150 (66.67%)
3 3024 bp 67.96 5.80 95.14
SCN18_14_9_16_R4_B_scaffold_8082
Species: SCNPILOT_EXPT_1000_BF_Microbacterium_69_10 (50%)
2 2040 bp 67.06 5.22 95.15
SCN18_14_9_16_R4_B_scaffold_3260
Species: SCNPILOT_EXPT_750_BF_Actinomycetales_70_150 (57.14%)
7 5571 bp 69.81 6.97 95.15
SCN18_14_9_16_R4_B_scaffold_7889
Genus: Microbacterium (100%)
3 2087 bp 71.44 6.90 95.16
SCN18_14_9_16_R4_B_scaffold_4388
Genus: Microbacterium (75%)
4 3950 bp 68.28 6.46 95.16
SCN18_14_9_16_R4_B_scaffold_6916
Species: SCNPILOT_CONT_1000_BF_Actinobacteria_69_20 (66.67%)
3 2395 bp 67.93 5.51 95.20
SCN18_14_9_16_R4_B_scaffold_5972
Order: Micrococcales (66.67%)
3 2797 bp 66.50 6.11 95.24
SCN18_14_9_16_R4_B_scaffold_9722
Species: SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13 (50%)
2 1688 bp 69.73 5.60 95.26
SCN18_14_9_16_R4_B_scaffold_13590
Species: CN-SCN_Leifsonia_139x (50%)
2 1225 bp 69.22 6.00 95.27
SCN18_14_9_16_R4_B_scaffold_14309
Species: CN-SCN_Microbacterium_37x (50%)
2 1165 bp 67.81 7.85 95.28
SCN18_14_9_16_R4_B_scaffold_6362
Phylum: Actinobacteria (66.67%)
3 2610 bp 69.27 6.95 95.29
SCN18_14_9_16_R4_B_scaffold_13924
Species: SCNPILOT_EXPT_1000_BF_Microbacterium_69_10 (100%)
2 1196 bp 67.73 7.27 95.32
SCN18_14_9_16_R4_B_scaffold_9597
Species: CN-SCN_Leifsonia_139x (100%)
2 1711 bp 68.85 5.87 95.38
SCN18_14_9_16_R4_B_scaffold_8604
Class: Actinobacteria (66.67%)
3 1912 bp 68.78 5.26 95.40
SCN18_14_9_16_R4_B_scaffold_11078
Genus: Microbacterium (66.67%)
3 1487 bp 68.86 5.14 95.43
SCN18_14_9_16_R4_B_scaffold_11759
Species: SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13 (50%)
2 1411 bp 57.76 4.57 95.46
SCN18_14_9_16_R4_B_scaffold_5794
Genus: Microbacterium (50%)
4 2889 bp 67.15 6.13 95.53
SCN18_14_9_16_R4_B_scaffold_5234
Species: SCNPILOT_SOLID2_TRIM150_Actinobacteria_69_241 (66.67%)
3 3258 bp 66.94 6.49 95.58
SCN18_14_9_16_R4_B_scaffold_4592
Species: CN-SCN_Microbacterium_18x (66.67%)
3 3768 bp 67.62 5.65 95.62
SCN18_14_9_16_R4_B_scaffold_11507
Species: CN-SCN_Microbacterium_200x (50%)
2 1440 bp 62.64 5.63 95.63
SCN18_14_9_16_R4_B_scaffold_14484
Species: CN-SCN_Leifsonia_139x (100%)
2 1154 bp 72.36 5.59 95.67
SCN18_14_9_16_R4_B_scaffold_5615
Phylum: Actinobacteria (66.67%)
3 3004 bp 69.97 6.19 95.67
SCN18_14_9_16_R4_B_scaffold_4004
Genus: Microbacterium (60%)
5 4386 bp 68.65 7.73 95.69
Displaying items 501-550 of 844 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.