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SCN18_14_9_16_R4_B_Actinobacteria_68_6

In projects: SCN18_14_9_16_R4_B  |  scn18_genomes  |  SCN_ET-SeqDB_Dereplicated

Consensus taxonomy: Actinobacteria  →  Actinobacteria  →  Bacteria

Description

Extracted from CN18_14_9_16_R4_B_concoct_035

Displaying items 201-250 of 844 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCN18_14_9_16_R4_B_scaffold_6605
Species: SCNPILOT_SOLID_1_TRIM150_Microbacterium_69_53 (50%)
2 2515 bp 69.34 5.55 98.53
SCN18_14_9_16_R4_B_scaffold_10885
Species: SCNPILOT_SOLID_1_TRIM150_Microbacterium_69_53 (50%)
2 1512 bp 67.39 5.56 99.80
SCN18_14_9_16_R4_B_scaffold_3323
Genus: Microbacterium (83.33%)
6 5480 bp 67.96 5.56 92.24
SCN18_14_9_16_R4_B_scaffold_3842
Genus: Microbacterium (60%)
5 4611 bp 67.64 5.56 87.51
SCN18_14_9_16_R4_B_scaffold_8053
Order: Micrococcales (66.67%)
3 2046 bp 68.38 5.57 93.70
SCN18_14_9_16_R4_B_scaffold_11375
Species: CN-SCN_Microbacterium_27x (100%)
1 1455 bp 68.04 5.57 92.16
SCN18_14_9_16_R4_B_scaffold_8972
Species: CN-SCN_Leifsonia_139x (66.67%)
3 2613 bp 69.35 5.57 86.45
SCN18_14_9_16_R4_B_scaffold_10908
Phylum: Actinobacteria (66.67%)
3 1509 bp 60.83 5.57 70.18
SCN18_14_9_16_R4_B_scaffold_7848
Species: SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13 (100%)
1 2095 bp 67.45 5.58 48.26
SCN18_14_9_16_R4_B_scaffold_9847
Species: SCNPILOT_EXPT_750_BF_Actinomycetales_70_150 (50%)
2 1666 bp 70.05 5.58 89.86
SCN18_14_9_16_R4_B_scaffold_3832
Genus: Microbacterium (50%)
6 4625 bp 69.49 5.58 90.81
SCN18_14_9_16_R4_B_scaffold_6638
Genus: Microbacterium (50%)
4 2501 bp 69.33 5.58 85.65
SCN18_14_9_16_R4_B_scaffold_7866
Species: SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13 (100%)
1 2092 bp 60.66 5.59 82.89
SCN18_14_9_16_R4_B_scaffold_8089
Order: Micrococcales (66.67%)
3 2039 bp 67.88 5.59 91.37
SCN18_14_9_16_R4_B_scaffold_14484
Species: CN-SCN_Leifsonia_139x (100%)
2 1154 bp 72.36 5.59 95.67
SCN18_14_9_16_R4_B_scaffold_14833
Species: Microbacterium ginsengisoli_SCNPILOT_CONT_1000_P_Microbacterium_71_138 (100%)
2 1127 bp 69.30 5.59 96.89
SCN18_14_9_16_R4_B_scaffold_11426
Phylum: Actinobacteria (66.67%)
3 1448 bp 68.16 5.59 81.70
SCN18_14_9_16_R4_B_scaffold_9421
Species: SCNPILOT_EXPT_1000_BF_Actinomycetales_Beutenbergia_73_13 (66.67%)
3 1744 bp 72.36 5.59 84.46
SCN18_14_9_16_R4_B_scaffold_9722
Species: SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13 (50%)
2 1688 bp 69.73 5.60 95.26
SCN18_14_9_16_R4_B_scaffold_16504
Species: SCNPILOT_EXPT_750_BF_Actinomycetales_70_150 (50%)
2 1017 bp 69.12 5.60 100.00
SCN18_14_9_16_R4_B_scaffold_6803
Genus: Microbacterium (66.67%)
3 2438 bp 66.37 5.60 81.58
SCN18_14_9_16_R4_B_scaffold_4928
Genus: Microbacterium (66.67%)
3 3479 bp 65.85 5.61 88.99
SCN18_14_9_16_R4_B_scaffold_9890
Species: CN-SCN_Leifsonia_139x (50%)
2 1659 bp 72.03 5.61 99.10
SCN18_14_9_16_R4_B_scaffold_12959
Species: CN-SCN_Microbacterium_200x (66.67%)
3 1281 bp 64.79 5.62 57.14
SCN18_14_9_16_R4_B_scaffold_11507
Species: CN-SCN_Microbacterium_200x (50%)
2 1440 bp 62.64 5.63 95.63
SCN18_14_9_16_R4_B_scaffold_6696
Phylum: Actinobacteria (66.67%)
3 2478 bp 64.73 5.63 79.70
SCN18_14_9_16_R4_B_scaffold_15774
Species: SCNPILOT_CONT_1000_BF_Actinobacteria_69_20 (50%)
2 1063 bp 71.78 5.64 96.24
SCN18_14_9_16_R4_B_scaffold_12259
Species: SCNpilot_P_inoc_Microbacterium_67_17 (100%)
1 1353 bp 70.95 5.65 97.34
SCN18_14_9_16_R4_B_scaffold_4592
Species: CN-SCN_Microbacterium_18x (66.67%)
3 3768 bp 67.62 5.65 95.62
SCN18_14_9_16_R4_B_scaffold_11318
Species: CN-SCN_Microbacterium_37x (50%)
2 1460 bp 67.47 5.65 64.93
SCN18_14_9_16_R4_B_scaffold_8505
Species: CN-SCN_Microbacterium_27x (50%)
2 1937 bp 67.53 5.65 99.59
SCN18_14_9_16_R4_B_scaffold_15809
Species: Microbacterium testaceum_SCNpilot_P_inoc_Microbacterium_70_36 (50%)
2 1061 bp 71.54 5.66 66.73
SCN18_14_9_16_R4_B_scaffold_16240
Species: SCNpilot_P_inoc_Microbacterium_67_17 (50%)
2 1032 bp 67.15 5.67 90.70
SCN18_14_9_16_R4_B_scaffold_3913
Species: SCNPILOT_CONT_1000_BF_Actinobacteria_69_20 (80%)
5 4495 bp 64.32 5.67 97.98
SCN18_14_9_16_R4_B_scaffold_8339
Species: SCNPILOT_CONT_1000_BF_Actinobacteria_69_20 (66.67%)
3 1983 bp 71.76 5.67 100.30
SCN18_14_9_16_R4_B_scaffold_15826
Species: SCNPILOT_EXPT_750_BF_Actinomycetales_70_150 (50%)
2 1059 bp 62.42 5.67 45.04
SCN18_14_9_16_R4_B_scaffold_6055
Species: CN-SCN_Leifsonia_139x (50%)
2 2750 bp 70.73 5.67 88.91
SCN18_14_9_16_R4_B_scaffold_4213
Class: Actinobacteria (100%)
5 4153 bp 63.14 5.67 92.61
SCN18_14_9_16_R4_B_scaffold_5050
Genus: Microbacterium (50%)
6 3389 bp 61.76 5.67 93.39
SCN18_14_9_16_R4_B_scaffold_8643
Species: SCNPILOT_EXPT_750_BF_Actinomycetales_70_150 (66.67%)
3 1900 bp 65.68 5.68 88.74
SCN18_14_9_16_R4_B_scaffold_10533
Species: CN-SCN_Microbacterium_200x (50%)
2 1559 bp 68.18 5.68 95.83
SCN18_14_9_16_R4_B_scaffold_4699
Species: SCNPILOT_SOLID_1_TRIM150_Microbacterium_69_53 (75%)
4 3674 bp 69.41 5.68 99.13
SCN18_14_9_16_R4_B_scaffold_8220
Genus: Microbacterium (66.67%)
3 2006 bp 69.09 5.68 85.84
SCN18_14_9_16_R4_B_scaffold_4792
Species: Leucobacter komagatae (50%)
2 3588 bp 67.98 5.69 99.33
SCN18_14_9_16_R4_B_scaffold_12580
Species: CN-SCN_Leifsonia_139x (50%)
2 1319 bp 67.55 5.69 102.12
SCN18_14_9_16_R4_B_scaffold_3114
Genus: Microbacterium (85.71%)
7 5813 bp 69.74 5.70 89.39
SCN18_14_9_16_R4_B_scaffold_5371
Order: Micrococcales (50%)
6 3157 bp 68.32 5.70 77.80
SCN18_14_9_16_R4_B_scaffold_13763
Species: SCNPILOT_CONT_500_BF_Cellulomonas_73_12_partial (100%)
1 1211 bp 62.51 5.70 99.83
SCN18_14_9_16_R4_B_scaffold_12603
Species: SCNpilot_P_inoc_Microbacterium_67_17 (50%)
2 1316 bp 70.36 5.70 93.69
SCN18_14_9_16_R4_B_scaffold_8935
Species: CN-SCN_Leifsonia_139x (100%)
1 1839 bp 68.03 5.71 100.00
Displaying items 201-250 of 844 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.