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SCN18_14_9_16_R4_B_Actinobacteria_68_6

In projects: SCN18_14_9_16_R4_B  |  scn18_genomes  |  SCN_ET-SeqDB_Dereplicated

Consensus taxonomy: Actinobacteria  →  Actinobacteria  →  Bacteria

Description

Extracted from CN18_14_9_16_R4_B_concoct_035

Displaying items 401-450 of 844 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCN18_14_9_16_R4_B_scaffold_3757
Class: Actinobacteria (60%)
5 4740 bp 67.11 6.20 92.28
SCN18_14_9_16_R4_B_scaffold_8048
Species: SCNPILOT_CONT_500_BF_Actinomycetales_73_43 (50%)
2 2048 bp 66.80 5.79 92.29
SCN18_14_9_16_R4_B_scaffold_15357
Species: SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13 (50%)
2 1092 bp 67.77 6.59 92.31
SCN18_14_9_16_R4_B_scaffold_6467
Species: Pimelobacter simplex (66.67%)
3 2573 bp 66.11 7.40 92.34
SCN18_14_9_16_R4_B_scaffold_4006
Phylum: Actinobacteria (80%)
5 4382 bp 68.07 6.33 92.36
SCN18_14_9_16_R4_B_scaffold_3300
Genus: Microbacterium (60%)
5 5523 bp 66.85 5.92 92.40
SCN18_14_9_16_R4_B_scaffold_13898
Species: SCNPILOT_EXPT_1000_BF_Actinomycetales_Beutenbergia_73_13 (50%)
2 1198 bp 71.87 5.26 92.40
SCN18_14_9_16_R4_B_scaffold_14584
Species: SCNpilot_BF_INOC_Solirubrobacterales_68_7 (100%)
2 1146 bp 71.12 6.28 92.41
SCN18_14_9_16_R4_B_scaffold_9584
Class: Actinobacteria (66.67%)
3 1714 bp 74.45 5.08 92.42
SCN18_14_9_16_R4_B_scaffold_13290
Species: CN-SCN_Leifsonia_139x (50%)
2 1253 bp 67.92 4.91 92.42
SCN18_14_9_16_R4_B_scaffold_5346
Species: SCNPILOT_EXPT_1000_BF_Microbacterium_69_10 (50%)
2 3174 bp 69.79 7.04 92.44
SCN18_14_9_16_R4_B_scaffold_13840
Species: Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x (50%)
2 1204 bp 70.02 6.10 92.44
SCN18_14_9_16_R4_B_scaffold_8265
Genus: Microbacterium (100%)
3 2524 bp 70.17 7.55 92.47
SCN18_14_9_16_R4_B_scaffold_6049
Order: Micrococcales (80%)
5 2754 bp 70.99 5.23 92.48
SCN18_14_9_16_R4_B_scaffold_4431
Species: SCNPILOT_EXPT_750_BF_Actinomycetales_70_150 (100%)
4 3908 bp 65.38 6.06 92.50
SCN18_14_9_16_R4_B_scaffold_10253
Genus: Microbacterium (50%)
4 1602 bp 67.29 6.18 92.51
SCN18_14_9_16_R4_B_scaffold_14515
Order: Micrococcales (66.67%)
3 1151 bp 69.94 6.26 92.53
SCN18_14_9_16_R4_B_scaffold_4007
Phylum: Actinobacteria (66.67%)
3 4381 bp 70.01 5.89 92.58
SCN18_14_9_16_R4_B_scaffold_15356
Species: SCNPILOT_SOLID2_TRIM150_Actinobacteria_69_241 (50%)
2 1092 bp 68.41 6.87 92.58
SCN18_14_9_16_R4_B_scaffold_7762
Species: Microbacterium ginsengisoli_SCNPILOT_CONT_1000_P_Microbacterium_71_138 (50%)
2 2119 bp 69.14 5.38 92.59
SCN18_14_9_16_R4_B_scaffold_13085
Order: Micrococcales (100%)
3 1270 bp 69.84 5.55 92.60
SCN18_14_9_16_R4_B_scaffold_9878
Species: SCNPILOT_EXPT_750_BF_Actinomycetales_70_150 (50%)
2 1662 bp 71.00 6.95 92.60
SCN18_14_9_16_R4_B_scaffold_5152
Species: Microbacterium testaceum_SCNpilot_P_inoc_Microbacterium_70_36 (66.67%)
3 3311 bp 67.80 7.88 92.60
SCN18_14_9_16_R4_B_scaffold_7563
Species: SCNPILOT_SOLID_1_TRIM150_Microbacterium_69_53 (50%)
2 2177 bp 71.93 7.30 92.60
SCN18_14_9_16_R4_B_scaffold_4213
Class: Actinobacteria (100%)
5 4153 bp 63.14 5.67 92.61
SCN18_14_9_16_R4_B_scaffold_16510
Species: SCNpilot_P_inoc_Microbacterium_67_17 (50%)
2 1017 bp 69.12 6.93 92.63
SCN18_14_9_16_R4_B_scaffold_16517
Species: CN-SCN_Leifsonia_139x (100%)
1 1017 bp 65.29 6.64 92.63
SCN18_14_9_16_R4_B_scaffold_4016
Genus: Microbacterium (60%)
5 4368 bp 66.55 5.53 92.65
SCN18_14_9_16_R4_B_scaffold_11928
Species: SCNPILOT_EXPT_750_BF_Actinomycetales_70_150 (50%)
2 1392 bp 69.47 5.17 92.67
SCN18_14_9_16_R4_B_scaffold_15755
Genus: Microbacterium (66.67%)
3 1065 bp 69.58 6.62 92.68
SCN18_14_9_16_R4_B_scaffold_11908
Species: SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13 (50%)
2 1395 bp 68.82 9.03 92.69
SCN18_14_9_16_R4_B_scaffold_8696
Species: SCNpilot_P_inoc_Microbacterium_67_17 (66.67%)
3 1889 bp 65.64 7.54 92.75
SCN18_14_9_16_R4_B_scaffold_5806
Order: Micrococcales (50%)
4 2878 bp 66.47 6.41 92.77
SCN18_14_9_16_R4_B_scaffold_14079
Species: SCNpilot_P_inoc_Microbacterium_67_17 (100%)
1 1183 bp 70.58 6.34 92.81
SCN18_14_9_16_R4_B_scaffold_6646
Genus: Microbacterium (66.67%)
3 2497 bp 67.84 7.21 92.87
SCN18_14_9_16_R4_B_scaffold_6353
Class: Actinobacteria (50%)
4 2615 bp 70.59 6.42 92.93
SCN18_14_9_16_R4_B_scaffold_15171
Species: SCNPILOT_EXPT_1000_BF_Microbacterium_69_10 (50%)
2 1104 bp 73.19 6.93 92.93
SCN18_14_9_16_R4_B_scaffold_13143
Species: SCNpilot_P_inoc_Microbacterium_67_17 (50%)
2 1265 bp 68.46 5.45 92.96
SCN18_14_9_16_R4_B_scaffold_5866
Species: CN-SCN_Leifsonia_139x (75%)
4 2843 bp 70.42 6.38 92.97
SCN18_14_9_16_R4_B_scaffold_5460
Genus: Microbacterium (50%)
4 3104 bp 70.36 6.14 92.98
SCN18_14_9_16_R4_B_scaffold_13436
Species: SCNPILOT_CONT_500_BF_Actinomycetales_73_43 (100%)
1 1239 bp 67.88 7.51 92.98
SCN18_14_9_16_R4_B_scaffold_4501
Species: Microbacterium sp. C448 (50%)
4 3855 bp 68.07 6.85 93.00
SCN18_14_9_16_R4_B_scaffold_9284
Species: CN-SCN_Microbacterium_18x (50%)
2 1771 bp 68.77 6.10 93.00
SCN18_14_9_16_R4_B_scaffold_9854
Order: Micrococcales (66.67%)
3 1664 bp 67.85 6.22 93.03
SCN18_14_9_16_R4_B_scaffold_4850
Genus: Microbacterium (100%)
3 3547 bp 68.28 7.06 93.04
SCN18_14_9_16_R4_B_scaffold_4399
Genus: Microbacterium (66.67%)
3 3940 bp 67.61 5.75 93.05
SCN18_14_9_16_R4_B_scaffold_15232
Species: CN-SCN_Leifsonia_139x (100%)
2 1099 bp 70.15 6.41 93.08
SCN18_14_9_16_R4_B_scaffold_9090
Species: SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13 (100%)
1 1811 bp 66.81 8.12 93.10
SCN18_14_9_16_R4_B_scaffold_15625
Genus: Microbacterium (66.67%)
3 1073 bp 68.97 5.17 93.10
SCN18_14_9_16_R4_B_scaffold_14661
Species: SCNPILOT_CONT_500_BF_Cellulomonas_73_12_partial (100%)
2 1140 bp 74.12 6.58 93.16
Displaying items 401-450 of 844 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.