ggKbase home page

SCN18_30_10_14_R5_P_scaffold_2953_4

Organism: SCN18_30_10_14_R5_P_SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14_61_9

near complete RP 38 / 55 MC: 3 BSCG 42 / 51 MC: 3 ASCG 10 / 38 MC: 1
Location: 1567..4188

Top 3 Functional Annotations

Value Algorithm Source
DNA topoisomerase 1 {ECO:0000256|HAMAP-Rule:MF_00952}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00952};; DNA topoisomerase I {ECO:0000256|HAMAP-Rule:MF_00952}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 89.6
  • Coverage: 872.0
  • Bit_score: 1571
  • Evalue 0.0
DNA topoisomerase I (EC:5.99.1.2) similarity KEGG
DB: KEGG
  • Identity: 89.6
  • Coverage: 872.0
  • Bit_score: 1571
  • Evalue 0.0
DNA topoisomerase I n=1 Tax=Rhizobium loti RepID=UPI00036C6076 similarity UNIREF
DB: UNIREF100
  • Identity: 89.7
  • Coverage: 872.0
  • Bit_score: 1572
  • Evalue 0.0

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14 → Mesorhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 2622
ATGGACGTCGTCGTCGTCGAATCGCCGGCCAAAGCGAAAACAATCAACAAGTATCTGGGGCGGAACTACAAGGTTCTGGCCTCGTTCGGCCATGTCCGCGACCTGCCTGCCAAGGACGGCTCGGTCCGCCCGGATGAAGACTTCTCCATGTCCTGGTCGGTCGATACCGCGTCAGGCAAGCGGCTCGCCGATATCGCCAAGGCGGTCAAGGACGCCGACGGCCTGATCCTCGCCACCGACCCTGATCGCGAGGGCGAGGCGATTTCGTGGCACGTGCTTGAGGTTTTGAAGCAGAAGCGCGTGTTGAAGGACAAGCCGGTCAGCCGCGTCGTCTTCAACGCTATCACCAAGAATTCCGTGCTCGACGCGATGGCAAATCCGCGCCAGATCGACGTGCCGCTGGTCGATGCCTACCTGGCACGGCGTGCGCTCGACTATCTCGTCGGCTTCACGCTGTCGCCGGTTCTGTGGCGCAAGCTGCCAGGCGCACGCTCGGCCGGACGCGTGCAGTCCGTTGCGCTGCGCCTCGTCTGCGAGCGCGAGTCGGAGATCGAACGCTTTGTTCGCGAGGAATACTGGCAGATCGCCGCAATCCTCGGCACACCTCGCAAGGAAAGTTTCGAGGCACGGCTGACCGCCTACGAAGGCAAGAAGCTGCAAAAGCTCGACATCAAGAACAAGGAGCAGGCCGACGGCATCAAGGCGATGCTGGACGGCGCGACGTTCCGCGCCCAGTCGGTCGAAGCAAAGCCCACCAAGCGCAACCCTGCCCCGCCCTTCACCACGTCTACCTTGCAGCAGGCCGCCTCTTCGCGCCTTGGCTTTTCGGCGAACCGCACCATGCAGGTGGCGCAGAAGCTCTATGAAGGCATGGACATCGGCGGAGAGACTGCCGGTCTCATTACCTATATGCGAACCGACGGCGTGCAGATGGCGCCCGAGGCGATTTCGACAGCCCGCGCCGCCATCGGCAAGGAGTTCGGCGACAAGTACCTGCCGGAAAAGCCGCGCTACTATTCCGCAAAGGCCAAGAACGCGCAGGAAGCGCACGAAGCTATCCGCCCGACCGACTTTTTCCGCACGCCGGCGTCGGTCAGGCAATATCTCGATGCCGATCAGTTCCGGCTTTACGATCTTGTCTGGAAGCGCGCCATCGCCAGCCAGATGAACCCGGCCGAAATCGAACGCACGACGGTCGAGATCGAGGCGGTGAACGGCCAGCGCACCGCCGGCCTGCGCGCTGTCGGCTCGGTGATCCGCTTCGACGGTTTCATCGCGGCCTATACCGACCATCGCGACGAAGATTCGGAAGACGAGGAAAACCGTCGCCTGCCCGAAATCCGCTCCGGCGAGCAGATGGCCCGCGAGGCGATCAACGCGACGCAGCACACGACCGAGCCGCCGCCGCGCTACTCGGAAGCGTCGCTCATCAAGAAGCTTGAAGAGCTCGGCATCGGCCGCCCTTCGACCTATGCGGCAACGCTGAAGACGCTGGAAGACCGCGAATACGTCGTCATCGACAAGCGCCGGCTGGTACCGGAAGCCAAGGGCCGCCTGGTGACGGCGTTCCTGGAAAGCTTCTTCGAGAAGTATGTCGAGTATGATTTCACGGCATCGCTGGAAGAAAAGCTCGACGAGATTTCCGACGGCAAGCTCGCCTGGAAGGACGTGCTGCGCGACTTCTGGAAAGACTTTTCGACATCCGTCGACGACATCAAGGAACTGCGCGTCACCGATGTGCTGGATGCGCTCAACGAAGCCCTTGCCCCGCTGGTGTTTCCGGTGCGGGAAGACGGTTCCAACCCGCGCATCTGCCCGAAATGCGGCAGCGGCAACCTGTCACTGAAGCTCGGCAAATATGGCGCGTTCGTCGGCTGCTCGAACTATCCCGAATGCGGCTATACGCGCCAGCTCGGCGAAAACGGCAACGGCAATGGCGAAAACGGCGCTGCCGATGACGGCACCAAGGTTCTCGGCAAGGACCCGTACACCGCCGAGGAAATTACCCTGCGCTCGGGCCGTTTCGGCCCCTATGTGCAGCGTGGCGACGGCAAGGAAGCCAAGCGTTCAAGCCTGCCGAAAGGCTGGAGCGTGGCGACCATCGACCATGAAAAGGCGCTGGCGCTGCTTGGACTGCCGCGCGATGTCGGCAAGCATCCGGAAACCGGCAAGATGATTTCCGCCGGCCTTGGCCGCTATGGACCGTTTGTGCTGCATGACGGCACCTATGCCAATCTCGACTCGATTGAGGACGTATTCTCGATCGGCCTCAACCGTGCCGTTACCGTTATCGCGGAAAAGCAGTCCAAGGGCAAGGGCGGCCGCAATGGCGGCACGCCGGCAGCGCTCAAGGAACTCGGAGACCACCCGGACGGCGGCGGCAAGATCGTCGTGCGCGACGGCAAATACGGGCCTTATGTCAATTTCGGCAAGGTCAATGCGACGCTGCCGAAGGGCAAGGACCCGCAAACCGTCACCATGGACGAAGCGCTTGCGCTGATCGCCGAAAAGGAAGCCAAGGGCGGCGGCGGCAAGAAGCCGTTCCGCAAGGCGGCGGGGAACGGCAAGCCGGCGGCTAAGAAAACGGCTGCAAAGAAAACGGCGGCGAAAAAGAAGGAATAG
PROTEIN sequence
Length: 874
MDVVVVESPAKAKTINKYLGRNYKVLASFGHVRDLPAKDGSVRPDEDFSMSWSVDTASGKRLADIAKAVKDADGLILATDPDREGEAISWHVLEVLKQKRVLKDKPVSRVVFNAITKNSVLDAMANPRQIDVPLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCERESEIERFVREEYWQIAAILGTPRKESFEARLTAYEGKKLQKLDIKNKEQADGIKAMLDGATFRAQSVEAKPTKRNPAPPFTTSTLQQAASSRLGFSANRTMQVAQKLYEGMDIGGETAGLITYMRTDGVQMAPEAISTARAAIGKEFGDKYLPEKPRYYSAKAKNAQEAHEAIRPTDFFRTPASVRQYLDADQFRLYDLVWKRAIASQMNPAEIERTTVEIEAVNGQRTAGLRAVGSVIRFDGFIAAYTDHRDEDSEDEENRRLPEIRSGEQMAREAINATQHTTEPPPRYSEASLIKKLEELGIGRPSTYAATLKTLEDREYVVIDKRRLVPEAKGRLVTAFLESFFEKYVEYDFTASLEEKLDEISDGKLAWKDVLRDFWKDFSTSVDDIKELRVTDVLDALNEALAPLVFPVREDGSNPRICPKCGSGNLSLKLGKYGAFVGCSNYPECGYTRQLGENGNGNGENGAADDGTKVLGKDPYTAEEITLRSGRFGPYVQRGDGKEAKRSSLPKGWSVATIDHEKALALLGLPRDVGKHPETGKMISAGLGRYGPFVLHDGTYANLDSIEDVFSIGLNRAVTVIAEKQSKGKGGRNGGTPAALKELGDHPDGGGKIVVRDGKYGPYVNFGKVNATLPKGKDPQTVTMDEALALIAEKEAKGGGGKKPFRKAAGNGKPAAKKTAAKKTAAKKKE*