ggKbase home page

SCN18_30_10_14_R5_P_scaffold_5808_3

Organism: SCN18_30_10_14_R5_P_SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14_61_9

near complete RP 38 / 55 MC: 3 BSCG 42 / 51 MC: 3 ASCG 10 / 38 MC: 1
Location: comp(1605..2423)

Top 3 Functional Annotations

Value Algorithm Source
TM component of ABC transporter of mannopine n=1 Tax=Rhizobium radiobacter RepID=K7WUK0_RHIRD similarity UNIREF
DB: UNIREF100
  • Identity: 74.9
  • Coverage: 271.0
  • Bit_score: 411
  • Evalue 5.00e-112
TM component of ABC transporter of mannopine {ECO:0000313|EMBL:AFX65624.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 74.9
  • Coverage: 271.0
  • Bit_score: 411
  • Evalue 7.00e-112
spermidine/putrescine transport system permease protein similarity KEGG
DB: KEGG
  • Identity: 62.1
  • Coverage: 272.0
  • Bit_score: 354
  • Evalue 1.60e-95

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14 → Mesorhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 819
ATGAGTTGGTTACTCCAACCGGCCTCGCAAACCCAAGTCACTCAACTTCAGCGCTTGTGGCTGTACGCTATTGCAGTTGTGACCGTGGTGTTCCTGGTGGCGCCAACACTGATCGTCATCCCGATGTCATTCTCGGGATCGGCATATCTGGAGTTCCCGCCAAAGGACCTGTCTCTGAGGTGGTACGAAAACTACTTCGGCTCCTCTGCATGGATGCGGTCCACGTATATCTCTTTCAGCGTCGCCATTCTCACCATGTTCTCGGCAACGATCATCGGGACCGCGGCTGCCTACGGAATCTGGGTCGGGAAGACTCGCTTCAGGACAGTGATCTGGGGCTTGTTCGCCCTGCCAATGGCCATTCCTGTCATCCTACTCGCCGTGGGGTCTCTGTTCGTCTTCGCCAAGCTCGGTCTCGTGAATACCATGCTGGGCCTGACCCTCATGCACACGGCTCTTGCTCTGCCCTTCGTGATGATCGTGATTACGGCAGGGCTGACGTCATACGACATCTACCAAGAGCAGGCGGCTCGGAGCCTCGGCGCAACCCGCCTCTATGCGTTCTTCACGGTCACCCTTCCGCAAATCAGGTTTTCCGTAATTTCAGCGATGCTGTTTTCATTCTTCGCGTCGTTCGATGAAGTTGTCGTCGCGATGTTCATATCGACGGGCTCCGGCGCGACCTTGAACCGCCGCATGTTCAATTCCCTGCGAGATGACGTCGATCCAACGATCGCCGCCATTTCCACATGCCTCATAGCCGTTTCGATAGTGCTGATTGTGATCAGCCAGATGACCAGATCCCGCGCCAACAAATAG
PROTEIN sequence
Length: 273
MSWLLQPASQTQVTQLQRLWLYAIAVVTVVFLVAPTLIVIPMSFSGSAYLEFPPKDLSLRWYENYFGSSAWMRSTYISFSVAILTMFSATIIGTAAAYGIWVGKTRFRTVIWGLFALPMAIPVILLAVGSLFVFAKLGLVNTMLGLTLMHTALALPFVMIVITAGLTSYDIYQEQAARSLGATRLYAFFTVTLPQIRFSVISAMLFSFFASFDEVVVAMFISTGSGATLNRRMFNSLRDDVDPTIAAISTCLIAVSIVLIVISQMTRSRANK*