ggKbase home page

SCNpilot_expt_1000_bf_scaffold_1155_curated_6

Organism: scnpilot_dereplicated_Acidovorax_1

near complete RP 40 / 55 BSCG 41 / 51 ASCG 11 / 38
Location: comp(4040..4858)

Top 3 Functional Annotations

Value Algorithm Source
ECF subfamily RNA polymerase sigma-24 subunit n=1 Tax=Acidovorax sp. NO-1 RepID=H0C0P0_9BURK similarity UNIREF
DB: UNIREF100
  • Identity: 64.2
  • Coverage: 271.0
  • Bit_score: 307
  • Evalue 1.30e-80
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 53.9
  • Coverage: 258.0
  • Bit_score: 225
  • Evalue 1.60e-56
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 84.1
  • Coverage: 276.0
  • Bit_score: 432
  • Evalue 5.00e-118

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

R_Burkholderiales_64_960 → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 819
ATGCAAAACGATGAACACCTGATGGCGCTGGTGAACGCCAACCGCAGCACCCTGCTGCGCGCCGCCACGCGCCTGCTGGGGCCGGCCGAGGCCGAGGACGCCGTGCAAGACGCCTACGTGCGTGCGCTGGAGGCCCAGGCCCCAGCGCTCAATGCGGCCCAGGCGTGGCTGTTGACGGTGGTGCGCAACCTGGCCATCGACCGCCTGCGGCGGCGCCAGTGGATGGTCCAATGGCTGACCGAAGCCACGCAGACCGCGCATGGCGATGTTCCCGGTTCGGTCGCGCCCTCGGCAGAGGCCGATGCCGCGCTGGCGCAGCAAGCCACGCTCGCATTGCGGCGGCTGGCGGCGTGCGTCACGCCTATGGAGGGCGCCGCAGTGCTGCTGTATGCGGTGTTCGATGCCAGCCATGCCGAACTGGCTCAGGCCACCGGCCGGACTGAAGCGGCCAGCCGCCAGCAATTGCGCCGCGCGTTGCAGCGCTTGCGGCAGGCCGAAGCGCAGGCCCGCCACGGTGATGGACGCGATGAACCCAGTGACGGCGACCCGGCGGTGCTGCGCCTTTATCTGCAGTCTTTGCAACTACGGGACCCGCAGGCCCTGTGGGCCCTGCTGCGCCAGCCGCCCGTGAGTGCGATGGCGACGCAGCGCTCCGTGCAATCCGTACCACCGCGTGCCTCACGCGCACCGGCCACGGTGGGTGGGGTGGTGCAGGTGGGCGGGCAACTGGGTTTGGTGCTCACGCTCGACGGCGTGACACTGTGCGTGTTGCCCTTGGGGCCATGCGCCGAGCTGGCCCAAGACGTCGTGGTGGCCTAG
PROTEIN sequence
Length: 273
MQNDEHLMALVNANRSTLLRAATRLLGPAEAEDAVQDAYVRALEAQAPALNAAQAWLLTVVRNLAIDRLRRRQWMVQWLTEATQTAHGDVPGSVAPSAEADAALAQQATLALRRLAACVTPMEGAAVLLYAVFDASHAELAQATGRTEAASRQQLRRALQRLRQAEAQARHGDGRDEPSDGDPAVLRLYLQSLQLRDPQALWALLRQPPVSAMATQRSVQSVPPRASRAPATVGGVVQVGGQLGLVLTLDGVTLCVLPLGPCAELAQDVVVA*