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SCNpilot_expt_1000_bf_scaffold_4204_curated_7

Organism: scnpilot_dereplicated_Afipia_2

partial RP 38 / 55 MC: 2 BSCG 38 / 51 MC: 1 ASCG 11 / 38
Location: comp(4260..5459)

Top 3 Functional Annotations

Value Algorithm Source
tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ {ECO:0000256|RuleBase:RU362024}; EC=2.1.1.200 {ECO:0000256|RuleBase:RU362024};; tRNA (cytidine(32)/uridine(32)-2'-O)-methyltransferase {ECO:0000256|RuleBase:RU362024}; tRNA Cm32/Um32 methyltransferase {ECO:0000256|RuleBase:RU362024}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 87.1
  • Coverage: 395.0
  • Bit_score: 693
  • Evalue 2.30e-196
RNA methyl transferase TrmH; K02533 tRNA/rRNA methyltransferase [EC:2.1.1.-] similarity KEGG
DB: KEGG
  • Identity: 79.8
  • Coverage: 392.0
  • Bit_score: 621
  • Evalue 2.50e-175
RNA methyltransferase, TrmH family, group 1 n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P0Y8_9BRAD similarity UNIREF
DB: UNIREF100
  • Identity: 87.1
  • Coverage: 395.0
  • Bit_score: 693
  • Evalue 1.60e-196

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Taxonomy

Afipia broomeae → Afipia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1200
ATGACAGGTTCCGGGACTGACAAGACCAAGACACGCAAGGACATCGCCGGCCCCATCGTGGTGCTGGTCGAGCCGCAACTCGGTGAGAACATCGGCATGTGCGCGCGGGCCATGGGCAATTTCGGCCTGACGCGGCTGCGTCTGGTGAAGCCGCGCGACGGCTGGCCGAACATAGCAGCGCAGCGGGCAGCCGCGGGCGCGGATCATATTCTCGATCATGTCGAACTGTTCGACACGGTGGAAGCGGCGGTGGCCGACTGCTCGCTGCTGTTCGCCACCACGGCGCGGGCGCATGACCAGGCCAAGCCTGTGGTGGCCCCCGAAGAGGCCGCGCGCCAGATCGTCGGCGAGGTCGCGGCGAGCGGCACCGCAGCGATCCTGTTCGGGCGCGAGCGCCATGGCCTTGAGAACGACGAGGTTGCGCTCGCCAACCGCATCATCACCTATCCGGTGAATCCGGGCTTCGCTTCGCTGAACCTCGCGCAGGCGGTCCTGCTGATGGGCTACGAGTGGTTCAAGCTGGTGACGGCGAATGCGCTGCCGTTCGACAGGCCCGAACGCTCGGAGCGCGCATCGAGCCATCAGATGCAGACGTTCTTCGACAATCTCGTGGCCGAACTCGACAAGGTGGAATTCCTGCGCCCGCCCGAAAAGCGCGACACCATGCTGGTGAACCTGCGCAACATCTTCTCGCGTATGGAGCCGACCAAGCAGGACATGCATACGCTGCACGGCGTGGTCATGGCGATTGCCGAGGGCCGCAAGGGACCCGCGAAAGGCGGCGTGCTGGACGGCGCGGAGGCGACGCGGCTGCGCGCATTGCTCGCGGAGCATGGCGGGGGCGGCAACGCGTCGGACAGCGGCGGCTCGGTGCGCGGTCTTGCGCGTCTGTTGCGGCGAAATCCGACCGACGCGGAGCGCATGCTGTGGGAAGCCTTGCGCAGCGACCGGCGCTTTGCGTCTCACTTCAAGCGGCAGACGCCGGTGGGGCGGCACATTCCGGACTTCGTGTCCTTCACCAAGCGCATCGCTATCGAGATCGTCAATGCCGACGAGAGCGAGAGTATCGCACGCGACCGCGGCGCGCGCCGCGAATGGCTCGAAGCGCGCGACTATCGCGTCTGCCATTTCAAGGCTGCGGATATCGAGGCGGATTTGGCCGCGCAACTCGACCGACTGGCCGCGATGCCGACGCTGTGA
PROTEIN sequence
Length: 400
MTGSGTDKTKTRKDIAGPIVVLVEPQLGENIGMCARAMGNFGLTRLRLVKPRDGWPNIAAQRAAAGADHILDHVELFDTVEAAVADCSLLFATTARAHDQAKPVVAPEEAARQIVGEVAASGTAAILFGRERHGLENDEVALANRIITYPVNPGFASLNLAQAVLLMGYEWFKLVTANALPFDRPERSERASSHQMQTFFDNLVAELDKVEFLRPPEKRDTMLVNLRNIFSRMEPTKQDMHTLHGVVMAIAEGRKGPAKGGVLDGAEATRLRALLAEHGGGGNASDSGGSVRGLARLLRRNPTDAERMLWEALRSDRRFASHFKRQTPVGRHIPDFVSFTKRIAIEIVNADESESIARDRGARREWLEARDYRVCHFKAADIEADLAAQLDRLAAMPTL*