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SCNpilot_expt_1000_bf_scaffold_1044_curated_23

Organism: scnpilot_dereplicated_Afipia_2

partial RP 38 / 55 MC: 2 BSCG 38 / 51 MC: 1 ASCG 11 / 38
Location: 22172..25687

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 93.3
  • Coverage: 999.99
  • Bit_score: 2181
  • Evalue 0.0
transcription-repair coupling factor; K03723 transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-] similarity KEGG
DB: KEGG
  • Identity: 84.3
  • Coverage: 999.99
  • Bit_score: 1995
  • Evalue 0.0
Transcription-repair-coupling factor n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PBC6_9BRAD similarity UNIREF
DB: UNIREF100
  • Identity: 93.3
  • Coverage: 999.99
  • Bit_score: 2181
  • Evalue 0.0

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Taxonomy

Afipia broomeae → Afipia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 3516
ATGAAGACGTCGGCCAAATCTCCGGCGCAGGCGCTGCGGCCCGGCCACGCGCTGACCCTCGCCAATGTGGCCGAGGGCGCGGAAGGCCTTGTGATCTCGGACCTCGCGCGGGCGGTCGCGGCGAAGAAGGACGCGCCCGCGGTCAGCCTCGTCGTAGTATGCCGCGACGGGCCGCGCATGGCGCAGCTTGCGCGGGCGCTGGAGTTCTTTGCGCCCGATTTGGGCGTGCTGCAGTTTCCGGCATGGGACTGCCAGCCCTATGACCGCGTCTCGCCCCATGGCGGCATTCTGGCGCAACGCCTCACCACGCTGGCGAAGCTCTCGCGGCTCAAGGGCAGCGAGAAGGCGCTGATCGTGCTGACCACCGTGAACGCCATCGTCCAGCGCGTGCCCGCGCGCGAAGTGGTCGCGGCGCAAGCGCTGTCACTCGTCCCCAGCCACCGCGTGCCGATGGACAACATCGCGGCATGGCTGGAGCATAACGGCTACAACCGCACGTCGACCGTGCGCGAGCCGGGCGAATATGCCGTGCGCGGCGGCATCCTCGATCTGTTTCCGGCGGGGCTCGACCAGCCGGTGCGCCTCGACTTCTTCGGTGACACGCTGGAATCGATCCGCACCTTTGACGCCGAATCCCAGCGCACGCTGCTGGACATGCGCGGGCTCGATCTGGTCCCGGTGTCGGAATTCCAGCTTGTCACCGAAACCATCAAGCGCTTCCGCATGGGATACGTGGCGCAGTTCGGCGCGCCGGACCGCGACGACATGCTTTATGAAGCAGTGAGCGAAGGCCGCCGCCATCCCGGCATGGAGCACTGGCTACCGCTGTTCCAGGAGCGGATGGACACGCTGTTCGATTATCTCGACGGCTCGCCCGTGGTGCTGGAGCATCAGGCTGAGGATGCCGCGCGCGAGCGCTTCACCCAGATCGGCGACTATTACGAGGCGCGCCGCGAGGCGCTGGATACGCCCGGCGGCGGCGCGATCTACAAGCCGCTGCCGCCCGACCGGCTGTATCTCACCGACAGCGAATGGACGCAGCATCTGTCCGACGTCGCGCTGGCGCGGCTGACGCCATTCGCGCTGCCGGATGGCGAAGGCGTGATCGACATCGATGCGCGGCAGGGCCGCGACTTCGCGCCGGAACGCGGCGACGCCAAGGTCAACGTGTTCGAGAGCGTGGTGGCGCATATCAACGGCCTGCAGGCTGCGCGCCGGAAGGTCGTCGTCGCGCTGTGGAGCGAAGGCTCGCGCGACCGCATGGCCTCGATGCTGAAGGACCACAAGCTGCTCAACATCACCAGCGTGAATTCGTGGCGCGCGGTGCAGGCGACGCCGCGCAACGAAACCATGCTGGCGGTGATCGGCCTCGAGTCCGGTTTCGAGACCGAGAGCATCGCACTCATCACCGAGCAGGACATCCTTGGCGATCGGCTGGTGCGGCCGCGCAAGGCCAGCCGCAAGCTGGAGAACTTCATCTCTGAAGTGACGTCGCTGGCCACCGGCGACATCGTCGTTCATGTCGAGCACGGCATCGGCCGTTTCGTCGGGTTGCAGACGCTGCAGGTCGGCGGCGCGCCGCATGACTGTCTCGAACTGCACTATGCCAACGAGACAAAGCTGTTCCTGCCGGTCGAGAACATCGAGCTTCTGTCGCGCTACGGCTCCGACCAGACCCATGTCGAACTCGACAGGTTAGGGGGCGGCGGATGGCAGGCGCGCAAGGCCAAGCTCAAGAACCGCATCCGCGAGATCGCGGGCGAACTGATCAAGATCGCCGCCGAGCGCCACGTCCACGAGGCGCCGAAATTCCCGATCCATCAGGGCACCTACGACGAATTCTGCGCGCGTTTCCCCTATGACGAGACCGAGGACCAGCTCGGCGCGATCAACGCCGCGTTGCATGACCTCGATCTGGGACGCCCGATGGATCGGCTGGTCTGCGGCGATGTCGGTTTCGGCAAGACGGAAGTGGCGCTGCGCGCGGCGTTCGCGGTCGCGCTGGATGGCAAGCAGGTGGCGGTCGTGGTGCCGACCACGCTCTTGGCGCGTCAGCATACGAAGACCTTCACCGAACGCTTCAAGGGCTTCCCGGTGAATGTGGCGCAGGCCTCGCGTCTGGTCGCGCCCAAGCAGATGACGCTGGTAAAGAAGGATCTTGCGGAGGGCAAGATCGACATCATCGTCGGCACCCATGCGCTGCTCGGCAAGAGCATCAAGTTCAAGGACCTCGGGCTTCTGATCGTGGACGAGGAACAGCACTTCGGCGTCTCGCACAAGGAACGGCTGAAGCAGCTTCGCGCCGAAATCCATGTGCTGACGCTCTCGGCAACGCCGATCCCGCGCACATTGCAACTGGCGCTGACGGGCGTGCGCGAACTCTCGATCATCGCGTCGCCGCCGGTCGATCGTCTGGCGGTGCGCACCTTCGTCGCGCCGCACGATCCGCTGATGATCCGCGAGGCGCTGCTGCGCGAGCGCTATCGTGGCGGACAGGCGTTCTATGTCGTGCCGCGCATCGAATATCTCGCCGAGGTGAAGGATTTTCTCGACAAGCATGTGCCGGAGATGAAGGTCGCGGTCGCGCACGGCCAGATGCCGCCGACCGTGATCGAGGACATCATGTCCGCGTTCTATGACGGCAAGTACGACGTGCTGCTGTCGACCACCATCGTGGAATCCGGTCTCGACATTCCGTCCGCGAACACGCTGATCGTGCATCGCGCCGACATGTTCGGTCTCGCGCAGCTTTATCAGTTGCGCGGGCGCGTCGGCCGCTCGAAGCTGCGCGCCTATGCGCTGTTCACCCTGCCGTCCACGCACAAGATCACCGCGCAGGCGGAGCGCCGCCTGAAGGTGCTACAGTCGCTGGACAACCTCGGTGCGGGCTTCCAACTCGCATCGCACGATCTCGACATCCGCGGCGCGGGCAATCTGCTCGGCGAGGAACAGTCCGGCCATATCAAGGAAGTCGGTTTCGAGCTGTACCAACAGATGCTTGAGGAGGCGATCGTCTCGCTCAAGGCTGGTATCTCCGAGCCTGTCGCGGACCGCTGGTCGCCGCAGATCACCCTCGGCATGCCGGTGCTGATTCCGGAGGATTATGTCGCGGACCTTGCGATCCGGCTGTCGCTCTATCGGCGTCTGGCCGATCTCGACACCGACGAGGAGATCGAGAACTTCGGAGCGGAGTTGCGCGACCGTTTCGGCCCGCTGCCGGACGAGGTGCGCTGGCTGTTCAAGGTCGCGGCCGTCAAGGCCTATTGCCGCCGCGCCAATGTCGAGAAGGTCGATGCCGGGCCGAAGGGCGCGGTCATCAGCTTCCGCGACAACGCCTTCGCCCAGCCCGAGAAGCTGGTGCATTTCATCCGCCAGCACGGACAGGCTGCGAAGGTGCGCCCCGACATGAAGGTGGTGTTCTTCCAGGAATGGGAAACCGCGGAGGAACGTGTTGAAGGCGCGACCACGATCCTGCGCGATCTGGCCAATCTCGCCGAAGGCAAGAAGGCGGCGTAG
PROTEIN sequence
Length: 1172
MKTSAKSPAQALRPGHALTLANVAEGAEGLVISDLARAVAAKKDAPAVSLVVVCRDGPRMAQLARALEFFAPDLGVLQFPAWDCQPYDRVSPHGGILAQRLTTLAKLSRLKGSEKALIVLTTVNAIVQRVPAREVVAAQALSLVPSHRVPMDNIAAWLEHNGYNRTSTVREPGEYAVRGGILDLFPAGLDQPVRLDFFGDTLESIRTFDAESQRTLLDMRGLDLVPVSEFQLVTETIKRFRMGYVAQFGAPDRDDMLYEAVSEGRRHPGMEHWLPLFQERMDTLFDYLDGSPVVLEHQAEDAARERFTQIGDYYEARREALDTPGGGAIYKPLPPDRLYLTDSEWTQHLSDVALARLTPFALPDGEGVIDIDARQGRDFAPERGDAKVNVFESVVAHINGLQAARRKVVVALWSEGSRDRMASMLKDHKLLNITSVNSWRAVQATPRNETMLAVIGLESGFETESIALITEQDILGDRLVRPRKASRKLENFISEVTSLATGDIVVHVEHGIGRFVGLQTLQVGGAPHDCLELHYANETKLFLPVENIELLSRYGSDQTHVELDRLGGGGWQARKAKLKNRIREIAGELIKIAAERHVHEAPKFPIHQGTYDEFCARFPYDETEDQLGAINAALHDLDLGRPMDRLVCGDVGFGKTEVALRAAFAVALDGKQVAVVVPTTLLARQHTKTFTERFKGFPVNVAQASRLVAPKQMTLVKKDLAEGKIDIIVGTHALLGKSIKFKDLGLLIVDEEQHFGVSHKERLKQLRAEIHVLTLSATPIPRTLQLALTGVRELSIIASPPVDRLAVRTFVAPHDPLMIREALLRERYRGGQAFYVVPRIEYLAEVKDFLDKHVPEMKVAVAHGQMPPTVIEDIMSAFYDGKYDVLLSTTIVESGLDIPSANTLIVHRADMFGLAQLYQLRGRVGRSKLRAYALFTLPSTHKITAQAERRLKVLQSLDNLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAIVSLKAGISEPVADRWSPQITLGMPVLIPEDYVADLAIRLSLYRRLADLDTDEEIENFGAELRDRFGPLPDEVRWLFKVAAVKAYCRRANVEKVDAGPKGAVISFRDNAFAQPEKLVHFIRQHGQAAKVRPDMKVVFFQEWETAEERVEGATTILRDLANLAEGKKAA*