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SCNpilot_expt_300_bf_scaffold_310_curated

Search features with annotation key words

Displaying items 121-150 of 154 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_310_curated_121
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(127678..128442)
DNA (765bp) protein (255aa)
ABC branched chain amino acid transporter, ATPase subunit n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TU06_TISMK
livG; branched chain amino acid ABC transporter ATPase
ABC branched chain amino acid transporter, ATPase subunit {ECO:0000313|EMBL:AFK56244.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
SCNpilot_expt_300_bf_scaffold_310_curated_122
Hoeflea sp. IMCC20628, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(128439..129446)
DNA (1008bp) protein (336aa)
ABC branched chain amino acid transporter, inner membrane subunit n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TU07_TISMK
Amino acid/amide ABC transporter membrane protein 2, HAAT family {ECO:0000313|EMBL:AKH98873.1}; TaxID=1620421 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. IMCC20628.;"
branched chain amino acid ABC transporter inner membrane protein
SCNpilot_expt_300_bf_scaffold_310_curated_123
Oceanicola batsensis, Oceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(129443..129841)
DNA (399bp) protein (133aa)
ABC branched chain amino acid transporter, inner membrane subunit n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3TT32_9RHOB
ABC branched chain amino acid transporter, inner membrane subunit {ECO:0000313|EMBL:EAQ04809.1}; TaxID=252305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola batsensis (strain ATCC BAA-863 / DSM 15984 / HTCC2597).;"
braD; branched chain amino acid ABC transporter inner membrane protein
SCNpilot_expt_300_bf_scaffold_310_curated_124
Peptococcaceae bacterium BRH_c4a, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(130276..131532)
DNA (1257bp) protein (419aa)
ABC branched chain amino acid transporter, periplasmic ligandbinding protein n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TU09_TISMK
Uncharacterized protein {ECO:0000313|EMBL:KJR96262.1}; TaxID=1629716 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae.;" source="Peptococcaceae bacterium BRH_c4a.;"
ABC branched chain amino acid transporter, periplasmic ligandbinding protein
SCNpilot_expt_300_bf_scaffold_310_curated_125
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(131600..132373)
DNA (774bp) protein (258aa)
fabG; 3-oxoacyl-ACP reductase (EC:1.1.1.100)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000371FB36
3-oxoacyl-ACP reductase {ECO:0000313|EMBL:AJR22494.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
SCNpilot_expt_300_bf_scaffold_310_curated_126
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(132370..133527)
DNA (1158bp) protein (386aa)
Acyl-CoA dehydrogenase domain protein n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V514_SPHWW
acyl-CoA dehydrogenase domain-containing protein
Acyl-CoA dehydrogenase domain protein {ECO:0000313|EMBL:ABQ67380.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_expt_300_bf_scaffold_310_curated_127
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(133543..134337)
DNA (795bp) protein (265aa)
enoyl-CoA hydratase/isomerase; K01692 enoyl-CoA hydratase [EC:4.2.1.17]
Enoyl-CoA hydratase/isomerase n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V515_SPHWW
Enoyl-CoA hydratase/isomerase {ECO:0000313|EMBL:ABQ67381.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_expt_300_bf_scaffold_310_curated_128
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(134368..135573)
DNA (1206bp) protein (402aa)
Acyl-CoA dehydrogenase domain protein n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V514_SPHWW
acyl-CoA dehydrogenase domain-containing protein
Acyl-CoA dehydrogenase domain protein {ECO:0000313|EMBL:ABQ67380.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_expt_300_bf_scaffold_310_curated_129
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

135644..137248
DNA (1605bp) protein (535aa)
AMP-dependent synthetase and ligase n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IG06_XANP2
AMP-dependent synthetase and ligase
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:ABS66949.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCNpilot_expt_300_bf_scaffold_310_curated_130
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

137377..138501
DNA (1125bp) protein (375aa)
Iron-containing alcohol dehydrogenase n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WGC4_VEREI
iron-containing alcohol dehydrogenase
Iron-containing alcohol dehydrogenase {ECO:0000313|EMBL:ABM56681.1}; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
SCNpilot_expt_300_bf_scaffold_310_curated_131
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

138508..139218
DNA (711bp) protein (237aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WGC5_VEREI
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABM56682.1}; Flags: Precursor;; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
SCNpilot_expt_300_bf_scaffold_310_curated_132
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

139234..140232
DNA (999bp) protein (333aa)
Alcohol dehydrogenase zinc-binding domain protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IG05_XANP2
alcohol dehydrogenase
Alcohol dehydrogenase zinc-binding domain protein {ECO:0000313|EMBL:ABS66948.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCNpilot_expt_300_bf_scaffold_310_curated_133
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

140298..140519
DNA (222bp) protein (74aa)
Regulatory proteins, IclR n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WGC7_VEREI
regulatory protein IclR
Regulatory proteins, IclR {ECO:0000313|EMBL:ABM56684.1}; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
SCNpilot_expt_300_bf_scaffold_310_curated_134
unknown

Not on your lists

140664..140924
DNA (261bp) protein (87aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_310_curated_135
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

140991..141872
DNA (882bp) protein (294aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TUH9_ALIDB
hypothetical protein; K15270 S-adenosylmethionine uptake transporter
Uncharacterized protein {ECO:0000313|EMBL:AEB86685.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_310_curated_136
bacterium YEK0313, Bacteria

Not on your lists

comp(141942..143117)
DNA (1176bp) protein (392aa)
UPI0003CEE6CC related cluster n=1 Tax=unknown RepID=UPI0003CEE6CC
Major Facilitator Superfamily protein {ECO:0000313|EMBL:CEJ13297.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
major facilitator superfamily protein
SCNpilot_expt_300_bf_scaffold_310_curated_137
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(143128..144330)
DNA (1203bp) protein (401aa)
L-carnitine dehydratase/bile acid-inducible protein F n=1 Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LJB8_SYNFM
Uncharacterized protein {ECO:0000313|EMBL:GAO21159.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
L-carnitine dehydratase/bile acid-inducible protein F
SCNpilot_expt_300_bf_scaffold_310_curated_138
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(144334..145122)
DNA (789bp) protein (263aa)
Enoyl-CoA hydratase/isomerase family protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A7X1_9PROT
Enoyl-CoA hydratase {ECO:0000313|EMBL:GAO21158.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
enoyl-CoA hydratase/isomerase family protein
SCNpilot_expt_300_bf_scaffold_310_curated_139
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(145155..146522)
DNA (1368bp) protein (456aa)
Mmge/prpd family protein n=1 Tax=Nitratireductor indicus C115 RepID=K2PTZ6_9RHIZ
Mmge/prpd family protein {ECO:0000313|EMBL:GAO21157.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
mmge/prpd family protein
SCNpilot_expt_300_bf_scaffold_310_curated_140
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

146699..147751
DNA (1053bp) protein (351aa)
LysR family transcriptional regulator n=1 Tax=Nitratireductor indicus C115 RepID=K2NZ67_9RHIZ
LysR family transcriptional regulator {ECO:0000313|EMBL:GAO21156.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
LysR family transcriptional regulator
SCNpilot_expt_300_bf_scaffold_310_curated_141
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

147830..148861
DNA (1032bp) protein (344aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00035E930E
Uncharacterized protein {ECO:0000313|EMBL:GAO21155.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_310_curated_142
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

148858..149643
DNA (786bp) protein (262aa)
fabG; 3-oxoacyl-ACP reductase (EC:1.1.1.100); K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
3-oxoacyl-(Acyl-carrier protein) reductase n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F4I8_9RHIZ
3-oxoacyl-(Acyl-carrier protein) reductase {ECO:0000313|EMBL:GAO21154.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_310_curated_143
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(149710..151317)
DNA (1608bp) protein (536aa)
gamma-glutamyltransferase (EC:2.3.2.2); K00681 gamma-glutamyltranspeptidase [EC:2.3.2.2]
Gamma-glutamyltransferase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G8G1_ALIDK
Gamma-glutamyltransferase {ECO:0000313|EMBL:GAO25311.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_310_curated_144
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(151323..152285)
DNA (963bp) protein (321aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TUI1_ALIDB
hypothetical protein
Twin-arginine translocation pathway signal {ECO:0000313|EMBL:GAO25312.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_310_curated_145
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

152412..153317
DNA (906bp) protein (302aa)
LysR substrate-binding protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TUI2_ALIDB
LysR family transcriptional regulator
LysR family transcriptional regulator {ECO:0000313|EMBL:GAO25313.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_310_curated_146
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(153341..154057)
DNA (717bp) protein (239aa)
uracil-DNA glycosylase; K03648 uracil-DNA glycosylase [EC:3.2.2.27]
Uracil-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780}; Short=UDG {ECO:0000256|HAMAP-Rule:MF_00148};; EC=3.2.2.27 {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780};; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
Uracil-DNA glycosylase n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TUI3_ALIDB
SCNpilot_expt_300_bf_scaffold_310_curated_147
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(154118..154918)
DNA (801bp) protein (267aa)
Indole-3-glycerol-phosphate synthase (EC:4.1.1.48); K01609 indole-3-glycerol phosphate synthase [EC:4.1.1.48]
Indole-3-glycerol phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00134, ECO:0000256|SAAS:SAAS00046689}; Short=IGPS {ECO:0000256|HAMAP-Rule:MF_00134};; EC=4.1.1.48 {ECO:0000256|HAMAP-Rule:MF_00134, ECO:0000256|SAAS:SAAS00046705};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Indole-3-glycerol phosphate synthase n=2 Tax=Alicycliphilus denitrificans RepID=E8TUI4_ALIDB
SCNpilot_expt_300_bf_scaffold_310_curated_148
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(154921..155073)
DNA (153bp) protein (51aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TUI5_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB86691.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_310_curated_149
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(155070..156101)
DNA (1032bp) protein (344aa)
anthranilate phosphoribosyltransferase (EC:2.4.2.18); K00766 anthranilate phosphoribosyltransferase [EC:2.4.2.18]
Anthranilate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083107}; EC=2.4.2.18 {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083113};; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
Anthranilate phosphoribosyltransferase n=2 Tax=Alicycliphilus denitrificans RepID=F4G8G7_ALIDK
SCNpilot_expt_300_bf_scaffold_310_curated_150
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(156101..156670)
DNA (570bp) protein (190aa)
glutamine amidotransferase of anthranilate synthase; K01658 anthranilate synthase component II [EC:4.1.3.27]
Glutamine amidotransferase of anthranilate synthase n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TUI7_ALIDB
Panthranilate synthase component II {ECO:0000313|EMBL:GAO21146.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
Displaying items 121-150 of 154 in total

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