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SCNpilot_expt_300_bf_scaffold_599_curated_19

Organism: scnpilot_dereplicated_Alicycliphilus_1

near complete RP 50 / 55 MC: 1 BSCG 51 / 51 ASCG 13 / 38
Location: comp(13798..14817)

Top 3 Functional Annotations

Value Algorithm Source
RluA family pseudouridine synthase; K06179 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] similarity KEGG
DB: KEGG
  • Identity: 95.6
  • Coverage: 339.0
  • Bit_score: 642
  • Evalue 8.90e-182
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 95.6
  • Coverage: 339.0
  • Bit_score: 642
  • Evalue 4.00e-181
Pseudouridine synthase n=2 Tax=Alicycliphilus denitrificans RepID=E8TZ96_ALIDB similarity UNIREF
DB: UNIREF100
  • Identity: 95.6
  • Coverage: 339.0
  • Bit_score: 642
  • Evalue 2.80e-181

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Taxonomy

Alicycliphilus denitrificans → Alicycliphilus → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1020
GTGAAACACATTATAGGGGGCAAACCCGCCCAGGGCAGGGCCCCAGTCCAAGCCCCTGCGGCACGCATCGTCGAGGTCGATGCCGAGTCCGCGGGCCAGCGGCTCGACAACTTCCTGATACGCCACCTCAAGGGCGTGCCCAAGACCCACGTCTACCGCATCATCCGCAGCGGCGAGGTGCGCCTGAACAAGGGCCGCGCCAGCGCCGACGCGCGCGTGGCCGCGGGCGACCGGGTGCGCCTGCCGCCCGTGCGCGTCTCGGACAAGGTGCAGGACAAGGCCGAGCGCCCCGCGCCCGCGCGCGAATTCCCCATCCTGCTGGAGGACGAGCACCTCATCGCGCTCGACAAGCCCGCCGGCGTGGCCGTGCACGGCGGCAGCGGCGTGAGCTTCGGCGTGATCGAGCAGCTGCGCCAGGCGAGGCCGCAGGCGCGCTACCTGGAGCTGGTGCACCGGCTCGACCGCGAGACCTCGGGCATCCTGCTCGTGGCCAAGAGGCGCTCGGCGCTCAAGCACCTGCAGGACCAGTTCCGGGAGCGCGAGACCGGCAAGACCTACCTGGCCCTGGTGCAGGGCGCCTGGCCGGCCGGCAGGAAGGTCATCGACCTGCCGCTGCACAAATACCTGCAGGAGGACGGCGAGCGACGCGTGCGCGTCACCACGCCCCAGGACCCCGACGGCATGCGCTCCATCACCCTCGTGAAGGTGCGCAGCCTCCTTGATCCGCGCCCGCTGCAGGGCCTGCCCGCGATGAGCCTGCTGGAGGTGACCATCAAGACCGGGCGCACGCACCAGATCCGCGTGCACCTGTCCTCCCAGGGCCACCCGATCGCGGGCGACGACAAATACGGCGACTTCGACCTGAACCGGCGCCTGCAGAAGCAGGGCCTCAGGCGCATGTTCCTGCATGCGTGGCGCCTGCAGTTCGACCACCCGGCCAGCGGCGAGCGCATGGAGCTGCGCGCCGAGCTGCCGCCCGAGCTGGCGGCCTTTCTTTCCACCGGACATGCCGATGCCTGA
PROTEIN sequence
Length: 340
VKHIIGGKPAQGRAPVQAPAARIVEVDAESAGQRLDNFLIRHLKGVPKTHVYRIIRSGEVRLNKGRASADARVAAGDRVRLPPVRVSDKVQDKAERPAPAREFPILLEDEHLIALDKPAGVAVHGGSGVSFGVIEQLRQARPQARYLELVHRLDRETSGILLVAKRRSALKHLQDQFRERETGKTYLALVQGAWPAGRKVIDLPLHKYLQEDGERRVRVTTPQDPDGMRSITLVKVRSLLDPRPLQGLPAMSLLEVTIKTGRTHQIRVHLSSQGHPIAGDDKYGDFDLNRRLQKQGLRRMFLHAWRLQFDHPASGERMELRAELPPELAAFLSTGHADA*