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SCNpilot_expt_1000_bf_scaffold_2945_curated_2

Organism: scnpilot_dereplicated_Alphaproteobacteria_8

near complete RP 41 / 55 BSCG 41 / 51 MC: 2 ASCG 7 / 38
Location: 988..1521

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Pseudomonas pyrrocinia RepID=UPI0002DB95B8 similarity UNIREF
DB: UNIREF100
  • Identity: 49.2
  • Coverage: 177.0
  • Bit_score: 158
  • Evalue 5.00e-36
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=516466 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. H160.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 45.9
  • Coverage: 181.0
  • Bit_score: 158
  • Evalue 9.10e-36
RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 49.4
  • Coverage: 178.0
  • Bit_score: 157
  • Evalue 4.50e-36

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Taxonomy

Burkholderia sp. H160 → Burkholderia → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 534
ATGGCTCAGCAGTCTCGCTTCGAGGAACTGGCGCTGCCGTATCGCGATGCGGCGTACAATCTCGCCTATTGGATCGTGAGGAACTCCGACGACGCAGAAGACGTGGTTCAGGACGCCTATCTCAGGGCTTACCGCGCGTTCAATGGTTTCAGGGGCGAGGAAATGCGCCCGTGGTTGTTTGCGATCGTGCGCCATTGTGCTTACCGGCTGCTCAAGGTTCGCAAGCGCACGTACGATCTCGTTCCTCTCGATGAGACCAACAGCCCGGATGTCGCCTCTGGCGACCCCTCGGCAGAGGACACACTGGTCGAGGCCGTGAATGCACAGCACGTTCGCGCAGCACTGGCCGAACTCCCGCTCGCGTATCGCGACGTCGTCGTGCTTCGTGAAATGGAGAGCCTCTCCTACAGCGAGATCGCCGAGATCACGGGAGTGCCAATCGGCACGGTGATGTCGCGTCTTTCGCGAGGCAGGGCGCTGCTGCGGAAGGCCATGAAAGGACGTGAGACCGAAAGTGGATCCGATGCGCTGTGA
PROTEIN sequence
Length: 178
MAQQSRFEELALPYRDAAYNLAYWIVRNSDDAEDVVQDAYLRAYRAFNGFRGEEMRPWLFAIVRHCAYRLLKVRKRTYDLVPLDETNSPDVASGDPSAEDTLVEAVNAQHVRAALAELPLAYRDVVVLREMESLSYSEIAEITGVPIGTVMSRLSRGRALLRKAMKGRETESGSDAL*